Publications
IN
PRESS 2025 2024 2023 2022 2021
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2017 2016 2015
2014 2013 2012
2011 2010 2009
2008 2007 <2006
SUBMITTED
423- Bystrova, D., Assaad, C.K., Arbel, J., Devijver, E., Gaussier, E. & Thuiller, W. Causal Discovery from Time Series with Hybrids of Constraint-Based and Noise-Based Algorithms. Transactions on Machine Learning Research
422- Goury, R., Münkemüller, T., Bonfanti, N., Calderon-Sanou, I., Poulenard, J., Orchamp consortium & Thuiller, W. The role of earthworms in mediating environmental impacts on mountain ecosystem functioning. Global Ecology & Biogeography, in revision
421- Lucas, P.M., Thuiller, W.,, Talluto, M., ..., Pollock, L.J. Trophic interactions are key to understanding the effects of global change on the distribution and functional role of the brown bear. Global Change Biolology.
420- Vezzani, L., Schipper, A.M., Thuiller, W., Verburg, P.H., Smith, H.G., Marques, A., Global relationships between crop yield and pollinator abundance. Journal of Applied Ecology. PDF
419- Wootton, L.M., Boucher, F.C., Pouchon, C., Roquet, C., Coissac, E., Also, I.G., Valla, P., Husson, L., Bernet, M., Perrier, C., Douzet, R., Rome, M., Valay, J.-G., Alberti, A., Denoeud, F., Zimmermann, N.E., Wincker, P., Thuiller, W., Renaud, J., PhyloNorway consortium, PhyloAlps consortium & Lavergne, S. Pleistocene climatic cycles, landscape dynamics and the late rise of sky-island vegetation in the European Alps. Nature Plants
418- Wootton, L.M., Boucher, F.C., Renaud, J., Valla, P.G., Midolo, G., Lososová, Z., Thuiller, W. & Lavergne, S. The Limited legacy of post-glacial recolonization in the floristic patterns of the European Alps. Systematic Biology.
PUBLISHED
417- Cantera, I., Giachello, S., Münkemüller, T., Caccianiga, M., Gobbi, M., Losapio, G., Marta, S., Valle, B., Zawierucha, K., Thuiller, W., & Ficetola, F. (2025) Describing functional diversity of communities from environmental DNA. Trends in Ecology and Evolution, 4(2), 170-179 PDF
416- Dumont, M., Monteiro, D., Fihol, S., Gascoin, S., Marty, C., Hagenmuller, P., Morin, S., Choler, P. & Thuiller, W.. (2025) The European Alps in a changing climate: physical trends and impacts. Comptes Rendus Geoscience - Sciences de la Terre, 357, 25-42 PDF
415- Gérard, S., Decaëns, T., Butt, K.R., Briones, M.J.Y., Capowiez, Y., Cluzeau, D., Hoeffner, K., Le Bayon, R.-C., Marchán, D.F., Marsden, C., Muys, B., Pelosi, C., Pérès, G., Phillips, H.R.P., Santini, L., Thuiller, W. & Hedde, M. (2025) Putting earthworm conservation on the map: Shortfalls and solutions for developing earthworm conservation. Biological Conservation, 302: 110911, PDF
414- Hu, J., Si-Moussi, S., & Thuiller, W. (2025) Introduction to Deep Learning Methods for Multi-Species Predictions. Methods in Ecology and Evolution, 16(1) 228-246 PDF
413- Kass, J.M., Smith, A.B., Warren, D.L., Vignali, S., Schmitt, S., Aiello-Lammens, M.E., Arlé, E., Barbosa, A.M., Broennimann, O., Cobos, M.E., Guéguen, M., Guisan, A., Merow, C., Naimi, B., Nobis, M.P., Ondo, I., Osorio-Olvera, L., Owens, H.L., Pinilla-Buitrago, G.E., Robertson, M., Sánchez-Tapia, A., Thuiller, W., Valavi, R., Velazco, S.J.E., Zizka, A. & Zurell, D. (2025) Achieving higher standards in species distribution modeling by leveraging the diversity of available software. Ecography, e07346, PDF
412- Marchal, L., Gateuille, D., Naffrechouxa, E., Thuiller, W. & Poulenard, J. (2025) Polycyclic aromatic hydrocarbon contents and distributions in soils of the northern French Alps. Environmental Science and Pollution Research 32 (17), 10945-10959
411- Poggiato, G., Andréoletti, J., Pollock, L.J., & Thuiller, W. (2025) Integrating food webs in species distribution models can improve ecological niche estimation and predictions. Ecography,5, e07546 PDF
410- Rhor, M., Thuiller, W., Chalmandrier, L. & Münkemüller, T. (2025) The role of observation scales, trait correlations and competitive regimes in community assembly patterns. Ecology and Evolution, 15(4), e71272.
409- Staples, T.L., Blois, J., Cramer, K.L., Cunningham, E.T., Dornelas, M., Haberle, S.G., Heger, T., Kiessling, W., Magurran, A.E., O'Dea, A., Penny, A.M., Radeloff, V.C., Smith, J.A., Thuiller, W., Williams, J.W. & Pandolfi, J.M. (2025) A Conceptual Framework for Measuring Ecological Novelty. Global Ecology and Biogeography, 34:e70005. PDF
408- Antunes, A.C., Berti, E., Brose, U., Hirt, M.R., Karger, D.N., O’Connor, L.M.J., Pollock, L.J., Thuiller, W. & Gauzens, B. (2024) Linking biodiversity, ecosystem function, and Nature’s contributions to people: a macroecological energy flux perspective. Trends in Ecology & Evolution, 39, 427–434 PDF
407- Arpin, I., Poulenard, J., Ratouis, M., Birck, C., Bonet, R., Bourdeau, P., Choler, P., Crouzat, E., Dodier, H., Forêt, J., Fort, N., Girard, V., Liénard, B., Liger, L., Schwoehrer, C., Thuiller, W. & Valay, J.-G. (2024) Organising and enacting inter-organisational coordination in long-term social-ecological monitoring. Biological Conservation, 294, 110642.PDF
406- Botella, C. Gaüzère, P. O'Connor, L.M.J., Ohlmann, M. Renaud, J. Dou, Y. Graham, C., Verburg, P., Maiorano, L., Thuiller, W. 2024. Don’t bite the hand that feeds you: Meta food webs help in the face of the Eltonian shortfall. Global Change Biology, 30(6), e17359 PDF
405- Botella, C. Gaüzère, P. O'Connor, L.M.J., Ohlmann, M. Renaud, J. Dou, Y. Graham, C., Verburg, P., Maiorano, L., Thuiller, W. (2024) Land-use intensity influences European tetrapod food-webs. Global Change Biology, 30(2), e17167 PDF
404- Calderón-Sanou, I., Ohlmann, M., Münkemüller, T., Zinger, L., Hedde, M., Lionnet, C., Martinez-Almoyna, C., Saillard, A., Renaud, J., Le Guillarme, N., Gielly, L., Orchamp Consortium & Thuiller, W. (2024) Mountain soil food webs shaped by the interplay between habitat and pedoclimatic conditions. Soil Biology & Biochemistry, 190, 109282 PDF
403- Cantera, I., Carteron, A., Guerrieri, A., Marta, S., Bonin, A., Ambrosini, R., Anthelme, F., [et al.], Poulenard, J., Thuiller, W., Caccianiga, M. & Ficetola, G.F. (2024) The importance of species addition versus replacement varies over succession in plant communities after glacial retreat. Nature Plants, 10, 256–267 PDF
402- Carteron, A., Cantera, I., Guerrieri, A., Marta, S., Bonin, A., …, Poulenard, J., Thuiller, W., Caccianiga, M. & Ficetola, G.F. Dynamics and drivers of mycorrhizal fungi after glacier retreat. New Phytologist, 242(4), 1739-1752
401- Chauvier, Y., Pollock, L.J., Verburg, P.H., Karger, D.N., Pellissier, L., Lavergne, S., Zimmermann, N.E; & Thuiller, W. (2024) Transnational conservation to anticipate future plant shifts in Europe. Nature Ecology & Evolution, PDF
400- Dumas, K., Rosa, A., Yannic, G., Gallet, C., Calderon-Sanou, I., Lionnet, C., Thuiller, W., Lavergne, S., & Ibanez, S. How cushion plant communities structure nival soil biodiversity : a metabarcoding study in the French Alps. Basic and Applied Ecology, 2024, 49-60, PDF
399- Essl, F., García-Rodríguez, A., Lenzner, B., Alexander, J.M., Capinha, C., Gaüzère, P., Guisan, A., Kühn, I., Lenoir, J., Richardson, D.M., Rumpf, S., Svenning, J.C., Thuiller, W., Zurell, D. & Dullinger, S. (2024) Potential sources of time lags in calibrating species distribution models. Journal of Biogeography, 51(1), 89-102 PDF
398- Ficetola, G.F., Marta, S., Guerrieri, A., Cantera, I., Bonin, A., ..., Thuiller, W. & Carteron, A. The development of terrestrial ecosystems emerging after glacier retreat. Nature, 632, 336–342, https://doi.org/10.1038/s41586-024-07778-2
397- Foulquier, A., Datry, T., Corti, R., von Schiller, D., Tockner, K., Stubbington, R., Gessner, M., Boyer, F., Ohlmann, M., Thuiller, W., , et al. (2024) Unravelling large-scale patterns and drivers of biodiversity in dry rivers. Nature Communications, 15, 7233, PDF
396- Guerrieri, A., Cantera, I., Marta, S., Bonin, A., […], Fontaneto, D., Thuiller, W. & Ficetola, G.F. (2024) Local climate modulates the development of soil nematode communities after glacier retreat. Global Change Biology, 30(1), e17057 PDF
395- Hartig, F., Abrego, N., Bush, A., Chase, J.M., Guillera-Arroita, G., Leibiold, M.A., Ovaskainen, O., Pellissier, L., Pichler, M., Poggiato, G., Pollock, L.J., Si-Moussi, S., Thuiller, W., Viana, D.S., Warton, D., Zurell, D. & Yu, D.W. (2024) Novel community data in ecology - properties and prospects. Trends in Ecology and Evolution, 39(3), 280-293 PDF
394- Kambach, S., Axmanová, I., Attorre, F., Biurrun, I., Bonari, G.,Carranza, M.L., Chiarucci, A., Chytrý, M., Dengler, J., Garbolino, E., Golub, V., Hickler, T., Jandt, U., Jansen, J., Jašková, A., Jiménez-Alfaro, B.,Karger, D.N., Lososová, Z., Rašomavičius, V., Rusina, S., Sieber, P., Stanisci, A., Thuiller, W., Welk, E., Zimmermann, N.E. & Bruelheide, H. Climate regulation processes are linked to the functional composition of plant communities in European forests, shrublands, and grasslands. Global Change Biology, 30(2), e171189 PDF
393- Kass, J.M., Fukaya, K., Thuiller, W. & Mori, A.S. (2024) Biodiversity modeling advances will improve predictions of nature’s contributions to people. Trends in Ecology & Evolution, 39, 338–348 PDF
392- Litchman, E., Villéger, S., Zinger, L., Augeret, J.-C., Thuiller, W., Kraft, N.J.B., Philippot, L. & Violle, C. Refocusing the microbial rare biosphere concept through a functional lens. Trends in Ecology and Evolution, 39(10), 923-936 PDF
391- Martinez-Almoyna, C., Calderon-Sadou, I., Lionnet, C., Gielly, L., Boyer, F., Dufour, P., Dunyach, Lily., Miquel, C., Olhmann, M., Poulenard, J., Renaud, J., Saillard, A., Si-Moussi, S., Stephan, R., Varoux, M., Münkemüller, T., & Thuiller, W. (2024) Vegetation structure and climate shape mountain arthropod distributions across trophic levels. Journal of Applied Ecology, 93(10), 1510-1523 PDF
390- Midolo, G., Axmanová, I., Divíšek, J., Dřevojan, P., Lososová, Z., Večeřa, M. et al. (2024) Diversity and distribution of Raunkiær’s life forms in European vegetation. Journal of Vegetation Science, 35, e13229 PDF
389- Mouillot, D., Velez, L., Albouy, C., Casajus, N., Claudet, J., Delbar, V., Devillers, R., Letessier, T.B., Loiseau, N., Manel, S., Mannocci, L., Meeuwig, J., Mouquet, N., Nuno, A., O’Connor, L.J.M., Parravicini, V., Renaud, J., Seguin, R., Troussellier, M. & Thuiller, W. The socioeconomic and environmental niche of protected areas reveals global conservation gaps and opportunities. Nature Commmunications, 15, 9007. PDF
388- O'Connor, L.M.J., Cosentino, F., Harfoot, M.B.J, Maiorano, L., Mancino, C., Pollock, L.J., & Thuiller, W. (2024) Vulnerability of terrestrial vertebrate food webs to anthropogenic threats in Europe. Global Change Biology, 30(3), e17253, PDF
387- O’Connor, L.M.J, Renaud, J., Dou, Y., Karger, D.N., Maiorano, L., Verburg, P.H. & Thuiller, W. (2024) Habitat suitability of European land systems for terrestrial vertebrates. Global Ecology and Biogeography, 33:e13903 PDF Data
386- Ohlmann, M., Munoz, F., Massol, F. & Thuiller, W. (2024) Assessing mutualistic metacommunity capacity by integrating spatial and interaction networks. Theoretical Population Biology, 154, 22–39 PDF
385- Pranzini, N., Maiorano L., Cosentino F., Thuiller W. & Santini, L. (2024) On the role of species interactions in shaping the geographic pattern of ungulate abundance across African savannah. Scientific Report, 14, 19647 PDF
384- Pereira, H.M., Martins, I.S., Rosa, I.M.D., Kim, H., Leadley, P., Popp, A., van Vuuren, D.P., Hurtt, G., Quoss, L., Arneth, A., Baisero, D., Bakkenes, M., Chaplin-Kramer, R., Chini, L., Di Marco, M., Ferrier, S., Fujimori, S., Guerra, C.A., Harfoot, M., Harwood, T.D., Hasegawa, T., Haverd, V., Havlík, P., Hellweg, S., Hilbers, J.P., Hill, S.L.L., Hirata, A., Hoskins, A.J., Humpenöder, F., Janse, J.H., Jetz, W., Johnson, J.A., Krause, A., Leclère, D., Matsui, T., Meijer, J.R., Merow, C., Obersteiner, M., Ohashi, H., De Palma, A., Poulter, B., Purvis, A., Quesada, B., Rondinini, C., Schipper, A.M., Settele, J., Sharp, R., Stehfest, E., Strassburg, B.B.N., Takahashi, K., Talluto, M.V., Thuiller, W., Titeux, N., Visconti, P., Ware, C., Wolf, F. & Alkemade, R. (2024) Global trends and scenarios for terrestrial biodiversity and ecosystem services from 1900 to 2050. Science, 384, 458–465 PDF
383- Prima, M.C., Renaud, J., Witté, I., Suarez, L., Rouveyrol,Fernando, M.,Sacchi, A., Cosentino, F., Santini, L., Maiorano, L., Moreira, F., Dertien, J., Fernandez, N., & Thuiller, W. (2024) A comprehensive framework to assess multi-species landscape connectivity for conservation planning. Methods in Ecology and Evolution, 15(12), 2385-2399 PDF
382- Thuiller, W. (2024) Ecological Niche Modeling. Current Biology 34, R225–R229 PDF
381- Thuiller, W., Calderon-Sanou, I, Chalmandrier, L., Gaüzere, P., O'Connor, L.O., Ohlmann, M., Poggiato, M. & Münkemüller, T. (2024) Navigating the integration of Biotic Interactions in Biogeography. Journal of Biogeography, 51(4), 550-559 PDF
380- Thuiller, W., Saillard, A, ... The Orchamp Consortium. (2024) ORCHAMP: an observatory network for monitoring Biodiversity and Ecosystem Functioning Across Space and Time in Mountains. Comptes Rendus. Biologies, 347(4), 223-247. PDF
379- Vallé, C., Poggiato, G., Thuiller, W., Jiguet, F., Princé, K., Le Viol, I. Species associations in joint species distribution models: from missing variables to conditional predictions. Journal of Biogeography, 51(2), 312-324 PDF
378- Bektaş, B., Thuiller, W., Renaud, J., Guéguen, M., Calderon-Sanou, I., Valay, J.-G., Colace, M.-P. & Münkemüller, T. (2023) A spatially explicit trait-based approach uncovers changes in assembly processes under warming. Ecology Letters, 26, 1119-1131 PDF
377- Cutts, V., Hanz, D.M., Barajas-Barbosa, M.P., Schrodt, F., Steinbauer, M.J., Beierkuhnlein, C., Denelle, P., Fernández-Palacios, J.M., Gaüzère, P., Grenié, M., Irl, S.D.H, Kraft, N., Kreft, N., Maitner, B., Munoz, F., Thuiller, W., Violle, C., Weigelt, P., Field, R. & Algar, A.C. (2023) Links to rare climates do not translate into distinct traits for island endemics. Ecology Letters, 26(4), 504-515 PDF
376- Deschamps, G., Poggiato, G., Brun, P., Galliez, C. & Thuiller, W. (2023) Predict first - assemble later vs assemble first - predict later: revisiting the dilemma for functional biogeography. Methods in Ecology and Evolution, 14(10), 2680-2696 PDF
375- Dou, Y., Zagaria, C., O’Connor, L., Thuiller, W. & Verburg, P.H. (2023) Using the Nature Futures Framework as a lens for developing plural land use scenarios for Europe for 2050. Global Environmental Change, 83, 102766 PDF
374- Dutta, T., De Barba, M., Selva Fernandez, N., Fedorca, A., Maiorano, L., Thuiller, W., Zedrosser, A., Signer, J., Pflüger, F., Frank, S., Lucas, P. & Balkenhol, N. (2023) An objective approach to select surrogate species for connectivity conservation. Frontiers in Ecology and Evolution,11, PDF
373- Gaüzere, P., Blonder, B., Denelle, P., Fournier, B., Grenié, M., Münkemüller, T., Munoz, F., Violle, C. & Thuiller, W. (2023) The functional trait distinctiveness of plant species is scale dependent. Ecography, e06504 PDF
372- Gaüzère, P., Botella, C., Poggiato, G., O’Connor, L.M.J., Di Marco, M., Dragonetti, C., Maiorano, L., Renaud, J. & Thuiller, W. (2023) Dissimilarity of vertebrate trophic interactions reveals spatial uniqueness but functional redundancy across Europe. Current Biology, 33(23), 5263-5271.e3 PDF
371- Giachello, S., Cantera, I., Carteron, A., Marta, S., Cipriano, C., Guerrieri, A., Bonin, A., Thuiller, W. & Ficetola, G.F. (2023) Toward a Common Set of Functional Traits for Soil Protists. Soil Biology & Biochemistry, 187, 109207 PDF
370- Guerrieri, A., Carteron, A., Bonin, A., Marta, S., Ambrosini, R., Caccianiga, M., Cantera, I., Compostella, C., Diolaiuti, G., Fontaneto, D., Gielly, L., Gili, F., Gobbi, M., Poulenard, J., Taberlet, P., Zerboni, A., Thuiller, W. & Ficetola, G.F. (2023) Metabarcoding data reveal vertical multitaxa variation in topsoil communities during the colonization of deglaciated forelands. Molecular Ecology, 32(23), 6304-6319 PDF
369- Leclerc, L., Calderón-Sanou, I., Martinez-Almoyna, C., Paillet, Y., Thuiller, W., Vincenot, L., The Orchamp Consortium & Kunstler, G. Beyond the role of climate and soil conditions: living and dead trees matter for soil biodiversity in mountain forests. Soil Biology and Biochemistry, 187, 109194 PDF
368- Le Guillarme, N., Hedde, M., Potapov, A.M., Berg, M.P., Briones, M.J.I, Calderón-Sanou, I., Degrune, F., Hohberg, K., Martinez-Almoyna, C., Martínez-Muñoz, C.A., Pey, B., Russell, D.J. & Thuiller, W. (2023) The Soil Food Web Ontology: aligning trophic groups, processes, and resources to harmonise and automatise soil food web reconstructions. Ecological Informatics, 78, 102360, PDF
367- Le Guillarme, N. & Thuiller, W. (2023) A Practical approach to constructing a knowledge graph for soil ecological research. European Journal of Soil Biology, 117, 103497 PDF
366- Lososová, Z., Axmanová, I., Chytrý, M., Midolo, G., Adbulhak, S., Karger, D.N., Renaud, J., Van Es, J., Vittoz, P. & Thuiller, W. (2023) Seed dispersal distance classes and dispersal modes for the European flora. Global Ecology and Biogeography, 32(19), 1485-1494 PDF
365- Mahaut, L., Choler, P., Denelle, P., Garnier, E., Thuiller, W., Kattge, J., Lemauviel-Lavenant, S., Lavorel, S., Munoz, F., Renard, D., Serra-Diaz, J.M., Viovy, N. & Violle, C. (2023) Trade-offs and synergies between ecosystem productivity and stability in temperate grasslands. Global Ecology and Biogeography, 32(4), 561-572 PDF
364- Marta, S., Zimmer, A., Caccianiga, M., Gobbi, M., Ambrosini, R., Azzoni, R.S., Gili, F., Pittino, F., Thuiller, W., Provenzale, A., Ficetola, G.F. (2023) Heterogeneous changes of soil microclimate in high mountains and glacier forelands. Nature Communications, 14:5306 PDF
363- Munoz, F., Klausmeier, C.A., Gaüzère, P., Kandlikar, G., Litchman, E., Mouquet, N., Ostling, A., Thuiller, W., Algar, A., Auber, A., Cadotte, M., Delalandre, L., Denelle, P., Enquist, B., Fortunel, C., Grenié, M., Loiseau, N., Mahaut, L., Maire, A., Violle, C., & Kraft, N. (2023) The ecological causes of functional distinctiveness in communities. Ecology Letters, 26(8), 1452-1465 PDF
362- Ohlmann, M., Matias, C., Poggiato, G., Dray, S., Thuiller, W., & Miele, V. (2023) Quantifying the overall effect of biotic interactions on species distributions along environmental gradients. Ecological Modelling, 483, 110424 PDF
361- Poggiato, G., Gaüzere, P., Deschamp, G., Martinez-Almoyna, C., Münkemüller, T., Violle, C., Renaud, J. & Thuiller, W. (2023) Predicting combinations of community mean traits using joint modeling. Global Ecology and Biogeography, 32(8), 1409-1422 PDF
360- Rigoudy, N., Dussert, G., Benyoub, A., Besnard, A., Birck, C., Boyer, J., Bollet, Y., Bunz, Y., De Backer, N., Caussimont, G., Chetouane, E., Chiffard Carriburu, J., Cornette, P., Delestrade, A., Dispan, L., Le Barh, M., Duhayer, J., Elder, J.-F., Fanjul, J.-B., Fonderflick, J., Froustey, N., Garel, M., Gaudry, W., Gérard, A., Gimenez, O., Hemery, A., Hemon, H., Jullien, J.-M., Knitter , D., Malafosse, I., Marginean, M., Ménard, L., Ouvrier, A., Pariset, G., Prunet, V., Rabault, J., Randon, M. Ribière, R., Raulet, Y., Régnier, A., Ribière, R., Ricci, J.-C., Ruette, S., Schneylin, Y., Sentilles, S., Siefert, N., Smith, B., Terpereau, G., Touchet, P., Thuiller, W., Uzal, A., Vautrain, V., Vimal, R., Weber, J., Spataro, B., Miele, V. & ; Chamaillé-Jammes, S. (2023) The DeepFaune initiative: a collaborative effort towards the automatic identification of the French fauna in camera-trap images. European Journal of Wildlife Research, 69, 113 PDF
359- Vale, M., Vieira, M., Grelle, C.E., Manes, S., Pires, A., Tardin, R., Weber, M., Menezes, M., O'Connor, L.M.J., Thuiller, W., and Tourinho, L.(2023) Ecosystem services delivered by Brazilian mammals: spatial and taxonomic patterns and comprehensive list of species. Perspectives in Ecology and Conservation, 21(4), 302-310 PDF
358- Auber, A., Waldock, C., Maire, A., Goberville, E., Albouy, C., Algar, A.C., McLean, M., BrindAmour, A., Green, A.L., Tupper, M., Vigliola, L., Kaschner, K., Reyes, K., Beger, M., Tjiputra, J., Toussaint, A., Violle, C., Mouquet, N., Thuiller, W., & Mouillot, D. A functional vulnerability framework for biodiversity conservation. Nature Communications, 13, 4774 PDF
357- Boonman, C.C.F, Huijbregts, M.A.J, Benitez-Lopez, A., Schipper, A.M., Thuiller, W. & Santini, L. (2022) Trait-based projections of climate change effects on global biome distributions, 28, 25–37 Diversity and Distributions. PDF
356- Botella, C., Dray, S., Matias, C., Miele, V. & Thuiller, W. (2022) An appraisal of graph embeddings for comparing trophic network architectures. Methods in Ecology and Evolution, 13(1) 203-216 PDF
355- Brun, P., Violle, C., Mouillot, D., Mouquet, N., Enquist, B.J., Munoz, F., Münkemüller, T., Ostling, A., Zimmermann, N.E. and Thuiller, W. Plant community impact on productivity: the interplay of community-level functional attributes, individual species, and environmental selection. Ecology Letters 25(4), 913-925 PDF
354- Calderon-Sanou, I., Zinger, L., Hedde, M., Martinez-Almoyna, C., Saillard, A., Renaud, J., Gielly, L., Khedim, N., Lionnet, C., Ohlmann, M., The Orchamp Consortium, Münkemüller, T. and Thuiller, W. Energy and physiological tolerance explain multi-trophic soil diversity in temperate mountains, Diversity and Distributions, 28, 2549– 2564 PDF
353- Caron, D., Maiorano, L., Thuiller, W. & Pollock, L.J. Reducing the Eltonian shortfall with trophic interaction models. Ecology Letters, 25(4), 889-899 https://doi.org/10.1111/ele.13966 PDF
352- Chauvier, Y., Descombes, P., Guéguen, M., Thuiller, W., & Zimmermann, N.E. Resolution in species distribution models shapes spatial patterns of plant multifaceted diversity. Ecography, e05973 PDF
351- Davies, T.J., Maurinc, O., Yessoufou, K., Daru, B.H., Bezeng, B.S., Mankga, L.T., Schaefer, H., Thuiller, W. & van der Bank, M. (2022) Woody plant phylogenetic diversity supports natures contributions to people but is at risk from human population growth. Conservation Letters, 15, e12914 PDF
350- Delalandre, L., Gaüzere, P., Thuiller, W., Cadotte, M., Mouquet, N., Mouillot, D., Munoz, F., Denelle, P., Loiseau, N., Morin, X. & Violle, C. (2022) Functionally distinct tree species support long-term productivity in extreme environments. Proceedings of the Royal Society of London, 289(1967) B.
349- Eisenhauer, N., Bender, S.F., Calderón-Sanou, I., de Vries, F.T., Lembrechts, J.J., Thuiller, W., Wall, D.H., Zeiss, R., Bahram, M., Beugnon, R., Burton, V.J., Delgado-Baquerizo, M., Geisen, S., Kardol, P., Krashevska, V., Martínez-Muñoz, C.A., Patoine, G., Seeber, J., Soudzilovskaia, N., Steinwandter, M., Sünnemann, M., Sun, X., Guerra, C.A. & Potapov, A. (2022) Frontiers in soil ecology - Insights from the World Biodiversity Forum 2022. Journal of Sustainable Agriculture and Environment, 1: 245– 261PDF
348- Flück, B., Mathon, L., Manel, S., Valentini, A., Dejean, T., Albouy, C., Mouillot, D., Thuiller, W., Murienne, J., Brosse, S. & Pelissier, L. (2022) Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem. Scientific Reports, 12:10247 [https://doi.org/10.1038/s41598-022-13412-w] PDF
347- Galiana, N., Lurgi, M., Bastazini, V., Bosch, J., Cagnolo, L., Cazelles, K., Claramunt, B., Emer, C., Fortin, M.J., Grass, I., Jauker, F., Leroux, S., McCann, K., McLeod, A., Montoya, D., Mulder, C., Steffan-Dewenter, I., Traveset, A., Vázquez, D., Wood, S., Gravel, D., Roslin, T., Thuiller, W. and Montoya, J.M. Ecological network complexity scales with area. Nature Ecology and Evolution, 6, 307-314. PDF
346- Garcès-Pastor, S., Coissac, E., Lavergne, S., [et al.], Alsos, I.G. High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change. Nature Communications, 13, 6559. PDF
345- Gaüzere, P., O'Connor, L., Botella, C., Poggiato, G., Münkemüller, T., Pollock, L.J. Brose, U., Maiorano, L., Harfoot, M.H. and Thuiller, W. (2022) The diversity of interactions complements functional and phylogenetic facets of biodiversity. Current Biology, 32(9), 2093-2100 PDF
344- Ge, D., Qu, Y., Deng, T., Thuiller, W., Fišer, C., Ericson, P.G.P., Guo, B., de la Sancha, N.U., von der Heyden, S., Hou, Z., Li, J., Abramov, A., Vogler, A.P., Jønsson, K.A. and Mittermeier, R. (2022), New progress in exploring the mechanisms underlying extraordinarily high biodiversity in global hotspots and their implications for conservation. Diversity and Distributions, 28, 2448-2458. PDF
343- Hedde, M., Blight, O., Briones, M.J.I., Bonfanti, J., Brauman, A., Brondani, M., Calderón Sanou, I., Clause, J., Conti, E., Cortet, J., Decaëns, T., Erktan, A., Gérard, S., Goulpeau, A., Iannelli, M., Joimel-Boulanger, S., Jouquet, P., Le Guillarme, N., Marsden, C., Martinez Almoyna, C., Mulder, C., Perrin, W., Pétillon, J., Pey, B., Potapov, A.M., Si-moussi, S., Thuiller, W., Trap, J., Zaitsev, A., Vergnes, A., and Capowiez, Y. A common framework for developing robust soil fauna classifications. Geoderma, 426, 116073 PDF
342- Le Guillarme, N. & Thuiller, W. (2022) TaxoNERD: deep neural models for the recognition of taxonomic entities in the ecological and evolutionary literature. Methods in Ecology and Evolution, 13, 625-641 PDF
341- Martinez-Almoyna, C., Saillard, A., Zinger, L., Lionnet, C., Arnoldi, C., Foulquier, A., Gielly, L., Piton, G., The Orchamp Consortium, Münkemüller, T. & Thuiller, W. (2022) Differential effects of soil trophic networks on microbial decomposition activity in mountain ecosystems. Soil Biology & Biochemistry, 172, https://doi.org/10.1016/j.soilbio.2022.108771, PDF
340- Mathieu, J., Antunes, A.C., Barot, S., Bonato Asato, A.E., Bartz, M.L.C., Brown, G.G., Calderon-Sanou, I., Decaëns, T., Fonte, S.J., Ganault, P., Gauzens, B., Gongalsky, K.B., Guerra, C.A., Hengl, T., Lavelle, P., Marichal, R., Mehring, H., Pena-Venegas, C.P., Castro, D., Potapov, A., Thébault, E., Thuiller, W., Witjes, M., Zhang, C. & Eisenhauer, N. (2022) sOilFauna - a global synthesis effort on the drivers of soil macrofauna communities and functioning. Soil Organisms, 94(2), 111-126 PDF
339- Moran, E.V., Thuiller, W., Angert, A. & Benito Garzon, B. (2022) Editorial: Predicting and managing climate-driven range shifts in plants. Frontiers in Ecology and Evolution, 10, PDF
338- Peterson, A.T.P., Aiello-Lammens, M.E., Amatulli, G., Anderson, R.P., Cobos, M.E., Diniz-Filho, J.A.F, Escobar, L.E., Feng, X., Franklin, J., Gadelha Jr., L.M.R., Georges, D., Guéguen, M., Gueta, T., Ingenloff, K., Jarvi, S., Jiménez, L., Karger, D.N., Kass, J.M., Kearney, M.R., Loyola, R., Machado-Stredel, F., Martínez-Meyer, E., Merow, C., Mondelli, M.L., Mortara, S.R., Muscarella, R., Myers, C.E., Naimi, B., Noesgaard, D., Ondo, I., Osorio-Olvera, L., Owens, H.L., Pearson, R., Pinilla-Buitrago, G.E., Sánchez-Tapia, A., Saupe, E.E., Thuiller, W., Varela, S., Warren, D.L., Wieczorek, J., Yates, K., Zhu, G., Zuquim, G. & Zurell, D. (2022) ENM2020: a free online course and set of resources on modeling species niches and distributions. Biodiversity Informatics, 17, 1-9
337- Smyčka, J., Roquet, C., Boleda, M., Alberti, A., Boyer, F., Douzet, R., Perrier, C., Rome, M., Valay, J.-G., Denoeud, F., Šemberová, K., Zimmermann, N.E., Thuiller, W., Winker, P., Alsos, I.G., Coissac, E., the PhyloAlps consortium, Lavergne, S. (2022) Tempo and drivers of plant diversification in the European mountain system. Nature Communications, 13, 2750 PDF
336- Bektaş, B., Thuiller, W., Saillard, A., Choler, P., Renaud, J., Colace, M.-C., Della Vedova, R., Münkemüller, T. (2021) Lags in phenological acclimation of mountain grasslands after recent warming. Journal of Ecology, 109, 3396-3410 PDF
335- Bystrova, D., Poggiato, G., Bektas, B., Arbel, J., Clark, J.S., Guglielmi, A. & Thuiller, W. (2021) Clustering species with residual covariance matrix in Joint Species Distribution models. Frontiers in Ecology and Evolution, 9, 601384, 09 March 2021 | https://doi.org/10.3389/fevo.2021.601384 PDF
334- Calderon-Sanou, I., Münkemüller, T., Zinger, L., Schimann, H., Yoccoz, N.G., Gielly, L., Foulquier, A., Hedde, M., Ohlmann, M., Roy, M., Si-Moussi, S. & Thuiller, W. (2021) Cascading effects of moth outbreaks on sub-arctic soil food webs. Scientific Reports, 11, 15054. PDF
333- Chauvier, Y., Thuiller, W., Brun, P., Lavergne, S., Descombes, P., Karger, D.N., Renaud, J. & Zimmermann, N.E. (2021) Influence of climate, soil and land cover on plant species distribution in the European Alps. Ecological Monographs, 91(2) e01433 PDF
332- Chauvier, Y., Zimmermann, N.E., Poggiato, G., Bystrova, D., Brun, P. & Thuiller, W. Novel methods to correct for observer and sampling bias in presence-only species distribution models. Global Ecology & Biogeography, 30, 2312–2325 PDF
331- Dou, Y., Cosentino, F.,
Malek, Z., Maiorano, L., Thuiller, W.,
& Verburg, P. (2021) A new European land systems
representation accounting for landscape characteristics.
Landscape Ecology,36(8) 2215-2234
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Data
330- Ficetola, G.F., Marta, S., Guerrieri, A., Gobbi, M., Ambrosini, R., Fontaneto, D., Zerboni, A., Poulenard, J., Caccianiga, M. & Thuiller, W. (2021) Dynamics of ecological communities following glacier retreats. Annual Review of Ecology, Evolution and Systematics, 52:405–26 PDF
329- Ficetola, G.F., Mazel, F., Falaschi, M., Marta, S., & Thuiller, W. (2021) Determinants of zoogeographical boundaries differ between vertebrate groups. Global Ecology & Biogeography, 30, 1796-1809 PDF
328- Floury, M., Pollock, L.J., Buisson, L., Thuiller, W., Chandesris, A. & Souchon, Y. (2021) Combining expert-based and computational approaches to design protected river networks under climate change. Diversity and Distributions, 27(12), 2428-2440 PDF
327- Galiana, N., Barros, C., Braga, J., Ficetola, G.F., Maiorano, L., Thuiller, W., Montoya, J. & Lurgi, M. (2021) The spatial scaling of food web structure across European biogeographical regions. Ecography, 44(5) 653-664 PDF
326- Guerrieri, A., Bonin, A., Münkemüller, T., Gielly, L., Thuiller, W., Ficetola, G.F. (2021) Effects of soil preservation for biodiversity monitoring using environmental DNA. Molecular Ecology, 30(13), 3313-3325 PDF
325- Hirt, M.R., Barnes, A.D., Gentile, A., Pollock, L.J., Rosenbaum, B., Thuiller, W., Tucker, M. & Brose, U. Environmental and anthropogenic constraints on animal space use drive extinction risk worldwide. Ecology Letters, 24(12), 2576-2585 PDF
324- Kunstler, G., Guyennon, A., Ratcliffe, S., Rüger, N., Ruiz-Benito, P., Salguero-Gomez, R., Childs, D.Z., Dahlgren, J., Kandler, G., Lehtonen, A., Thuiller, W., Wirth, C. & Zavala, M.A. (2021) Tree demographic performance of European tree species at their hot and cold edges. Journal of Ecology, 109, 1041-1054 PDF
323- Loiseau N., Thuiller, W., Stuart-Smith, R.D., Devictor, V., Edgar, G.J., Velez, L., Cinner, J., Graham N.A.J., Renaud, J., Hoey, A., Manel, S. & Mouillot, D. Maximising regional biodiversity requires a mosaic of protection levels. PLoS Biology 19(5): e3001195. https://doi.org/10.1371/journal.pbio.3001195
322- Marx, H.E., Carboni, M, Douzet, R., Perrier, C., Delbart, F., Thuiller, W., Lavergne, S. and Tank, D.C. (2021) Can functional genomic diversity provide novel insights into mechanisms of community assembly? A pilot-study from an invaded alpine streambed. Ecology and Evolution, 11(17), 12075-12091 PDF
321- Mathon, L., Guerin, P.-E., Normandeau, E., Valentini, A., Noel, C., Lionnet, C., Linard, B., Thuiller, W., Bernatchez, L., Mouillot, D., Dejean, T. & Manel, S. (2021) Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification. Molecular Ecology Resources, 1(7) 2565-2579 PDF
320- Mouillot, D., Loiseau, N., Grenié, M., Algar, A., Allegra, M., Cadotte, M., Casajus, N., Denelle, P., Guéguen, M., Maire, A., Maitner, B., McGill, B., McLean, M., Mouquet, N., Munoz, F., Thuiller, W., Villéger, S., Violle, C. & Auber, A. The dimensionality and structure of species trait spaces. Ecology Letters, 24:1988–2009 PDF
319- O'Connor, L.M.J., Pollock, L.J., Verhagen, W., Verburg, P.H., Lavorel, S., Renaud, J. & Thuiller, W. Balancing conservation priorities for nature and for people in Europe. Science, 372 (6544), 856-860 PDF
318- Poggiato, G., Münkemüller, T., Bystrova, D., Arbel, J., Clark, J.S. & Thuiller, W. (2021) On the interpretations of joint modelling in community ecology. Trends in Ecology and Evolution, 36(5), 391-401 PDF Appendices
317- Pouteau, R., Biurrun, I., Brunel, C., Chytrý, M., Dawson, W., Essl, F., Fristoe, T., Haveman, R., Hobohm, C., Jansen, F., Kreft, H., Lenoir, J., Lenzner, B., Meyer, C., Moeslund, J.E., Pergl, J., Pyšek, P., Svenning, J.-C., Thuiller, W., Weigelt, P., Wohlgemuth, T. & van Kleunen, M. Potential alien ranges of European plants are predicted to shrink in the future, but less so for naturalized than for not yet naturalized species. Diversity and Distributions, 27(11), 2063-2076 PDF
316- Pouteau, R., Thuiller, W., [...]. & van Kleunen, M. (2021) Climate and socio-economic factors explain differences between observed and expected naturalization patterns of European plants around the world. Global Ecology and Biogeography, 30(7), 1514-1531 DOI: 10.1111/geb.13316, PDF
315- Quian, H., Ricklef, R.E & Thuiller, W. (2021) Evolutionary assembly of flowering plants into sky islands. Nature Ecology and Evolution, 5, 640-646 https://doi.org/10.1038/s41559-021-01423-1 PDF
314- Stewart, A., Rioux, D., Boyer, F., Gielly, L., Pompanon, F., Saillard, A., Thuiller, W., The ORCHAMP Consortium, Valay, J.-G., Maréchal, E. & Coissac, E. Altitudinal zonation of green algae biodiversity in the French Alps. Frontiers in Plant Science, 12, DOI: 10.3389/fpls.2021.679428, PDF
313- Thom, D., Taylor, A.R., Seidl, R., Thuiller, W., Wang, J., Robideau, M. & Keeton, W.S. (2021) Forest structure, not climate, is the primary driver of functional diversity in northeastern North America. Journal of the Total Environment, 762: 143070 PDF
312- Weil, S.-S., Martinez-Almoyna, C., Piton, G., Renaud, J., Boulangeat, L., Foulquier, A., Saillard, A., Choler, P., Poulenard, J., ORCHAMP consortium, Münkemüller, T. & Thuiller, W. (2021) Strong links between plant traits and microbial activities but different abiotic drivers in mountain grasslands. Journal of Biogeography, 48(11), 2755-2770 PDF311- Alsos, I., Lavergne, S.,
Merkel, M.K.F., Boleda, M., Lammers, Y., Alberti, A.,
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310- Boonman, C., Benítez-López, A., Schipper, A., Thuiller, W., Anand, M., Cerabolini, B., Cornelissen, J., González-Melo, A., Hattingh, W., Higuchi, P., Laughlin, D., Onipchenko, V., Penuelas, J., Poorter, L., Soudzilovskaia, N., Huijbregts, M., Santini, L. (2020) Assessing the reliability of predicted plant trait distributions at the global scale. Global Ecology & Biogeography, 29, 1034–1051 PDF
309- Brun, P., Psomas, A., Ginzler, C., Thuiller, W., Zappa, M. and Zimmermann, N.E. (2020) Large-scale early-wilting response of Central European forests to the 2018 extreme drought. Global Change Biology, 26 (12), 7021-7035 PDF
308- Brun, P., Thuiller, W., Chauvier, Y., Pellissier, L., Wüest, R.O., Wang, Z. & Zimmermann, N.E. (2020) Model complexity affects species distribution projections under climate change. Journal of Biogeography, 47, 130–142 PDF
307- Calderón-Sanou, I., Münkemüller, T., Boyer, F., Zinger, L. & Thuiller, W. (2020) From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices? Journal of Biogeography, 47, 193-206 PDF
306- Cerasoli, F., Thuiller,
W., Guéguen, M., Renaud, J., D’Alessandro, P.,
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305- Dufour, P., Descamps, S., Chantepie, S., Renaud, J., Guéguen, M., Schiffers, K., Thuiller, W. & Lavergne, S. (2020) Reconstructing the geographic and climatic origins of long distance bird migrations. Journal of Biogeography, 47, 155–166 PDF
304- García-Navas, V. & Thuiller, W. (2020) Farmland bird assemblages exhibit higher functional and phylogenetic diversity than forest assemblages in France. Journal of Biogeography, 47 (11), 2392-2404 PDF
303- Kattge, J, Bönisch, G, Díaz, S, et al. (2020) TRY plant trait database – enhanced coverage and open access. Global Change Biology, 26: 119– 188. PDF
302- Loiseau, N., Mouquet, N., Casajus, N., Grenié, M., Gueguen, M., Maitner, B., Mouillot, D., Ostling, A., Renaud, J., Tucker, C., Velez, L., Thuiller, W. & Violle, C. (2020) Global distribution and conservation status of ecologically rare mammal and bird species. Nature Communications,11, 5071 PDF
301- O'Connor, L.M.J, Pollock, L.J., Braga, J., Ficetola, G.F., Maiorano, L., Martinez-Almoyna, C., Montemaggiori, A., Ohlmann, M. & Thuiller, W. (2020) Unveiling the food webs of tetrapods across Europe through the prism of the Eltonian niche. Journal of Biogeography, 47, 181–192 PDF
300- Maiorano, L., Montemaggiori A., O'Connor, L.M.J., Ficetola G.F., Thuiller W. (2020) TETRA-EU 1.0: A species-level trophic meta-web of European tetrapods. Global Ecology & Biogeography, 29(9), 1452-1457 PDF
299- Martinez-Almoyna, C., Piton, G., Abdulhak, S., Boulangeat, L., Choler, P., Delahay, T., Dentant, C., Foulquier, A., Poulenard, J., Noble, V., Renaud, J., Rome, M., Saillard, A., The ORCHAMP Consortium, Thuiller, W., & Münkemüller, T. (2020) Climate, soil resources and microbial activity shape the distributions of mountain plants based on their functional traits. Ecography, 43, 1550–1559 PDF
298- Münkemüller, T, Gallien, L, Pollock, LJ; Barros, C, Carboni, M, Chalmandrier, L, Mazel, F, Mokany, K, Roquet, C, Smyčka, J, Talluto, M, Thuiller, W. (2020) Do’s and don’ts when inferring assembly rules from diversity patterns. Global Ecology & Biogeography, 29, 1212-1229 PDF
297- Pollock, L.J., O'Connor, L.M.J., Mokany, K., Rosauer, D.F., Talluto, M.V. & Thuiller, W. (2020) Protecting biodiversity (in all its complexity): new models and methods. Trends in Ecology and Evolution, 35(12), 1119-1128 PDF
296- Thuiller, W., Gravel, D., Ficetola, G.F., Lavergne, S., Münkemüller, T., Pollock, L.J., Zimmermann, N.E. & Mazel, F. (2020) Productivity begets less phylogenetic diversity but higher uniqueness than expected. Journal of Biogeography, 47, 44–58 PDF
295- Turtureanu, P.D., Bec, S., Hurdu, B., Saillard, A., Šibík, J., Balázs, Z., Barros, C., Novikov, A., Renaud, J., Podar, D., Thuiller, W., Pușcaș, M., Choler, P. (2020) Biogeography of intraspecific trait variability in matgrass (Nardus stricta): high phenotypic variation at the local scale exceeds large scale variability patterns. Perspectives in Plant Ecology, Evolution and Systematics, 46, 125555 PDF
294- Wüest, R.O., Zimmermann, N.E., Zurell, D., Alexander, J., Fritz, S.A., Hof, C., Kreft, H., Normand, S., Cabral, J.S., Szekely, E., Thuiller, W., Wikelski, M. & Karger, D.N. (2020) Macroecology in the age of big data – where to go from here? Journal of Biogeography, 47, 1–12 PDF
293- Zurell, D., Franklin, J., Bouchet, P.J., Dormann, C.F., Elith, J., Fandos Guzman, G., Feng, X., Guillera-Arroita, G., Guisan, A., König, C., Lahoz-Monfort, J.J., Leitão, P.J., Park, D.S., Peterson, A.T., Rapacciuolo, G., Schmatz, D., Schröder, B., Serra-Diaz, J.M., Thuiller, W., Yates, K.L., Zimmermann, N.E. and Merow, C. (2020) A standard protocol for reporting species distribution models. Ecography, 43, 1261–1277 PDF
292- Braga, J., Pollock, L.P., Barros, C, Galiana, N., Montoya, J., Gravel, D., Maiorano, L., Montemaggiori, A., Ficetola, G.F., Dray, S. & Thuiller, W. (2019) Spatial analyses of multi-trophic terrestrial vertebrate assemblages in Europe. Global Ecology & Biogeography, 28, 1636–1648 PDF
291- Brun, P., Zimmermann, N.E., Graham, C.H., Lavergne, S., Pellissier, L., Münkemüller, T. & Thuiller, W. The biodiversity-productivity relationship varies across diversity dimensions. Nature Communications. 10:5691 | https://doi.org/10.1038/s41467-019-13678-1
290- Chalmandrier, L., Pansu, J., Zinger, L., Boyer, F., Coissac, E., Génin, A., Gielly, L., Lavergne, S., Legay, N., Schilling, V., Taberlet, P., Münkemüller, T. & Thuiller, W. Environmental and biotic drivers of soil microbial β-diversity across spatial and phylogenetic scale. Ecography, 42: 2144–2156 PDF
289- Falaschi, M., Manenti, R., Thuiller, W. and Ficetola, F.G. Continental-scale determinants of population trends in European amphibians and reptiles. Global Change Biology, 25 (10), 3504-3515 PDF
288- Klonner, G., Wessely, J., Gattringer, A., Moser, D., Dullinger, I., Hülber, K., Rumpf, S., Block, S., Bossdorf, O., Carboni, M., Conti, L., Dawson, W., Haeuser, E., Hermy, M., Münkemüller, T., Parepa, M., Thuiller, W., Van der Veken, S., Verheyen, K., van Kleunen, M., Essl, F., Dullinger, S. Effects of climate change and horticultural use on the spread of naturalized alien garden plants in Europe. Ecography, 42(9), 1548-1557 PDF
287- Kukkala, A., Maiorano, L., Thuiller, W. & Arponen, A. (2019). Identifying national responsibility species based on spatial conservation prioritization. Biological Conservation, 236, 411-419 PDF
286- Martinez-Almoyna, C., Thuiller, W., Chalmandrier, L., Clément, J.C., Foulquier, A., Ohlmann, M., Zinger, L. & Münkemüller, T. Multi-trophic beta-diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions. Functional Ecology, 33(10) 2053-2064 PDF
285- McLean, M., Auber, A., Graham, N.A.J., Houk, P., Villéger, S., Violle, C., Thuiller, W., Wilson, S.K. & Mouillot, D. Trait structure and redundancy determine sensitivity to disturbance in marine fish communities. Global Change Biology, 25(10) 3424-3437 PDF
284- Norberg, A., Abrego, N.F., Blanchet, G., Adler, F., Anderson, B.J., Anttila, J., Araújo, M.B., Clark, J., Dallas, T., Dunson, D., Elith J., Foster, S.D., Fox, R., Franklin, J., Godsoe, W., Guisan, A., O’Hara, B., Hill, N.A., Holt, R.D., Hui, F.K.C, Husby, M., Kålås, J., Lehikoinen, A., Luoto, M., Mod, H.K., Newell, G., Renner, I., Roslin, T., Soininen, J., Thuiller, W., Vanhatalo, J., Warton, D., White, M., Zimmermann, N.E., Gravel, D., & Ovaskainen, O. (2019) A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels. Ecological Monographs, 89(3):e01370 DOI: .1002/ecm.1370 PDF
283- Ohlmann, M., Miele, V., Dray, S., Chalmandrier, L., O’Connor, L. & Thuiller, W. (2019) Diversity indices for ecological networks: a unifying framework using Hill numbers. Ecology Letters, 22, 737-747 PDF
282- Peterson, A. T., Anderson, R. P., Beger, M. , Bolliger, J. , Brotons, L. , Burridge, C. P., Cobos, M. E., Cuervo‐Robayo, A. P., Di Minin, E. , Diez, J. , Elith, J. , Embling, C. B., Escobar, L. E., Essl, F. , Feeley, K. J., Hawkes, L. , Jiménez‐García, D. , Jimenez, L. , Green, D. M., Knop, E. , Kühn, I. , Lahoz‐Monfort, J. J., Lira‐Noriega, A. , Lobo, J. M., Loyola, R. , Mac Nally, R. , Machado‐Stredel, F. , Martínez‐Meyer, E. , McCarthy, M. , Merow, C. , Nori, J. , Nuñez‐Penichet, C. , Osorio-Olvera, L. , Pyšek, P. , Rejmánek, M. , Ricciardi, A. , Robertson, M. , Rojas Soto, O. , Romero‐Alvarez, D. , Roura‐Pascual, N. , Santini, L. , Schoeman, D. S., Schröder, B. , Soberon, J. , Strubbe, D. , Thuiller, W. , Traveset, A. , Treml, E. A., Václavík, T. , Varela, S. , Watson, J. E., Wiersma, Y. , Wintle, B. , Yanez‐Arenas, C. and Zurell, D. (2019), Open access solutions for biodiversity journals: Do not replace one problem with another. Diversity and Distributions, 25: 5-8. doi:10.1111/ddi.12885
281- Saladin, B., Thuiller, W., Graham, C.H., Lavergne, S., Maiorano, L., Salamin, N. & Zimmermann, N.E. (2019) Environment and evolutionary history shape phylogenetic turnover in European tetrapods. Nature Communications, 10, 249. doi:10.1038/s41467-018-08232-4 PDF
280- Santini, L., Pironon, S., Maiorano, L. & Thuiller, W. (2019) Addressing common pitfalls does not provide more support to geographical and ecological abundant-centre hypotheses. Ecography, 42, 696–705 doi: 10.1111/ecog.04027 PDF
279- Thuiller, W., Guéguen, M., Renaud, J., Karger, D.N., & Zimmermann, N.E. (2019) Uncertainty in ensembles of global biodiversity scenarios. Nature Communications. 10:1146 PDF
278- Zinger, L., Taberlet, P., Schimann, H., Bonin, A., Boyer, F., de Barba, M., Gaucher, P., Gielly, L., Giguet-Covex, C., Iribar, A., Réjou-Méchain, M., Rayé, G., Rioux, D., Schilling, W., Tymen, B., Viers, J., Zouiten, C., Thuiller, W., Coissac, E., & Chave, J. (2019) Body-size determinants of soil community assembly in a tropical forest. Molecular Ecology, 28, 528-543 PDF
277- Barros, C., Thuiller, W. and Münkemüller, T. (2018) Drought changes the effects of climate warming on forest-grassland ecotone stability. Plos One, 13(10): e0206138 PDF
276- Braga, J., ter Braak, C.J.F., Thuiller, W. & Dray, S. A novel approach to consider phylogenetic and spatial autocorrelations when testing for trait-environment relationships. Ecology, 99, 2667-2674 PDF
275- Carboni, M., Calderon-Sanou,
I., Pollock, L.J., Violle, C., DivGrass Consortium & Thuiller,
W. (2018) Functional traits modulate the response
of alien plants to abiotic and biotic gradients. Global
Ecology and Biogeography, 27, 1173-1185 PDF
274- Carboni, M., Guéguen, M., Barros, C., Georges, D., Boulangeat, I., Douzet, R., Dullinger, S., Klonner, G., van Kleunen, M., Essl, F., Bossdorf, O., Haeuser, E., Talluto, M., Moser, D., Block, S., Dullinger, I., Münkemüller, T., & Thuiller, W. (2018) Simulating plant invasion dynamics in mountain ecosystems under global change scenarios. Global Change Biology, 24, e289–e302, PDF
273- Conti, L., Block, S., Parepa, M., Münkemüller, T., Thuiller, W., Acosta, A.T.R., van Kleunen, M., Dullinger, S., Essl, F., Dullinger, I., Moser, D., Klonner, G., Bossdorf, O. & Carboni, C. (2018) Functional trait differences and trait plasticity mediate biotic resistance to potential plant invaders. Journal of Ecology, 106, 1607-1620 PDF
272- D'Amen, M., Mateo, R.G., Pottier, J., Thuiller, W., Maiorano, L., Pelissier, L., Ndiribe, C., Salamin, N. and Guisan, A. (2018) Improving spatial predictions of taxonomic, functional and phylogenetic diversity. Journal of Ecology, 106, 76-86 PDF
271- Dormann, C., Guillera-Arroita, G., Calabrese, J., Matechou, E., Bahn, V., Bartón, K., Beale, C., Ciuti, S., Elith, J., Gerstner, K., Guélat, J., Keil, P., Lahoz-Monfort, J., Lennon, J., Pollock, L.S., Reineking, B., Roberts, D., Schroeder, B., Thuiller, W., Warton, D., Wintle, B., Wood, S., Wüest, R., Hartig, F. Model averaging in ecology: a review of Bayesian, information-theoretic and tactical approaches. Ecological Monographs, 88(4) 485-504 PDF
270- Haeuser, E., Dawson, W., Thuiller, W., Dullinger, S., Block, S., Bossdorf, O., Carboni, M., Conti, L., Dullinger, I., Essl, F., Klonner, G., Moser, D., Münkemüller, T., Parepa, M., Talluto, M., Kreft, H., Pergl, J., Pyšek, P., Weigelt, P., Winter, M., Hermy, M., Van der Veken, S., Roquet, C. & van Kleunen, M. (2018) The European ornamental garden flora as an impending invasion debt under climate change. Journal of Applied Ecology, 55(5) 2386-2395 PDF
269- Kim, H., Rosa, I. M. D., Alkemade, R., Leadley, P., Hurtt, G., Popp, A., van Vuuren, D. P., Anthoni, P., Arneth, A., Baisero, D., Caton, E., Chaplin-Kramer, R., Chini, L., De Palma, A., Di Fulvio, F., Di Marco, M., Espinoza, F., Ferrier, S., Fujimori, S., Gonzalez, R. E., Gueguen, M., Guerra, C., Harfoot, M., Harwood, T. D., Hasegawa, T., Haverd, V., Havlík, P., Hellweg, S., Hill, S. L. L., Hirata, A., Hoskins, A. J., Janse, J. H., Jetz, W., Johnson, J. A., Krause, A., Leclère, D., Martins, I. S., Matsui, T., Merow, C., Obersteiner, M., Ohashi, H., Poulter, B., Purvis, A., Quesada, B., Rondinini, C., Schipper, A., Sharp, R., Takahashi, K., Thuiller, W., Titeux, N., Visconti, P., Ware, C., Wolf, F., and Pereira, H.M (2018) A protocol for an intercomparison of biodiversity and ecosystem services models using harmonized land-use and climate scenarios, Geoscientific Model Development, 11, 4537-4562 PDF
268- Ohlmann, M., Mazel, F., Chalmandrier, L., Bec, S., Chave, J., Coissac, E., Gielly, L., Pansu, J., Schilling, V., Taberlet, P., Zinger, L. & Thuiller, W. (2018) Mapping the imprint of biotic interactions on β-diversity. Ecology Letters, 21, 1660-1669 PDF
267- Pellissier, L., Albouy, C., Bascompte, J., Farwig, N., Graham, C., Loreau, M., Maglianesi, M., Melian, C., Pitteloud, C., Roslin, T., Rohr, R., Saavedra, S., Thuiller, W., Woodward, G., Zimmermann, N.E. & Gravel, D. (2018) Comparing species interaction networks along environmental gradients. Biological Reviews, 93(2) 785-800 PDF
266- Pironon, S., Villellas, J., Thuiller, W., Eckhart, V.M., Geber, M.A., Moeller, D.A., & García, M.B. The 'Hutchinsonian niche' as an assemblage of demographic niches: implications for species geographic ranges. Ecography, 41, 1103-1113 PDF
265- Santini, L., Isaac, N.J.B,
Maiorano, L., Ficetola, G.F., Huijbregts, M.A.J., Carbone,
C. & Thuiller, W. (2018) Global
drivers of population density in terrestrial vertebrates.
Global Ecology and Biogeography 27(8),
264- Sheppard, C.S., Carboni, C., Ess, F., Seebens, H., DivGrass Consortium & Thuiller, W. (2018) It takes one to know one: similarity to resident alien species increases establishment success of new invaders. Diversity and Distributions, 24(5), 680-691. PDF
263- Talluto, M.V., Mokany, K., Pollock, L.J. & Thuiller, W. (2018) Multifaceted biodiversity modelling at macroecological scales using Gaussian Processes. Diversity and Distributions, 24, 1492-1502 PDF
262- Thuiller, W., Guéguen, M., Bison, M., Duparc, A., Garel, M., Loison, A., Renaud, J. & Poggiato, G. (2018) Combining point-process and landscape vegetation models to predict large herbivore distributions in space and time – a case study of Rupicapra rupicapra. Diversity and Distributions, 24, 352-362 PDF
261- Tonnabel, J., Schurr, F.M.,
Boucher, F., Thuiller, W., Renaud, J.,
Douzery, E.J.P. & Ronce, O. (2018) Life history traits
evolved jointly with climatic niche and disturbance regime
in the genus Leucadendron (Proteaceae). The
American Naturalist, 191(2),
260- Yates, K.L., Bouchet, P.J.,
Caley, M.J., Mengersen, K., Randin, C.F., Parnell, S.,
Fielding, A.H., Bamford, A.J., Ban, S., Barbosa, A.M.,
Dormann, C.F., Elith, J., Embling, C.B., Ervin, G.N, Fisher,
R., Gould, S., Graf, R.F., Gregr, E.J., Halpin, P.,
Heikkinen, R.K., Heinänen, S., Jones, A.R., Krishnakumar,
P.K., Lauria, V., Lozano-Montes, H., Mannocci, L., Mellin,
C., Mesgaran, M.B., Moreno-Amat, E., Mormede, S., Novaczek,
E., Oppel, S., Crespo, G.O., Peterson, A.T., Rapacciuolo,
G., Roberts, J.J., Ross, R.E., Scales, K.L., Schoeman, D.,
Snelgrove, P., Sundblad, G., Thuiller, W.,
Torres, L.G., Verbruggen, H., Wang, L., Wenger, S.,
Whittingham, M.J., Zharikov, Y., Zurell, D., Sequeira,
A.M.M. Outstanding Challenges in the Transferability of
Ecological Models. Trends in Ecology and Evolution, 33,
790-802 PDF
259- Wüest, R.O., Lavergne, S., Münkemüller, T., Pollock, L.S., & Thuiller, W. (2018) Integrating correlation between traits improves spatial predictions of functional diversity patterns. Oikos, 127, 472-481 PDF
258- Zurell, D., Graham, C.H.,
Gallien, L, Thuiller, W., & Zimmermann,
N.E. (2018) Long-distance migratory birds threatened by
multiple independent risks from global change. Nature
Climate Change, 8, 992–996. PDF
257- Zurell, D., Pollock, L.J. & Thuiller, W. (2018) Do joint species distribution models reliably detect interspecific interactions from co-occurrence data in homogenous environments? Ecography, 41(11), 1812-1819 PDF
256- Barros, C., Guéguen, M.,
Douzet, R., Carboni, M., Boulangeat, I., Zimmermann, N.E.,
Münkemüller, T., and Thuiller, W. (2017)
Extreme climate events counteract the effects of climate and
land-use changes on Alpine treelines. Journal of Applied
Ecology, 54, 39-50 PDF
255- Carlson, B.Z., Corona, M.C., Dentant, C., Bonet, R., Thuiller, W., & Choler, P. Observed long-term greening of alpine vegetation – a case study in the French Alps. Environmental Research Letters, 12, 114006 PDF
254- Chalmandrier, L., Münkemüller, T., Colace, M.-P., Renaud, J., Aubert, S., Carlson, B.Z., Clément, J.-C., Legay, N., Pellet, G., Saillard, A., Lavergne, S. & Thuiller, W. Spatial scale and intraspecific trait variability mediate assembly rules in alpine grasslands. Journal of Ecology, 105, 277-287 PDF
253- Cotto, O., Wessely, J., Klonner, G., Dullinger, S., Thuiller, W. & Guillaume, F. (2017) Slow eco-evolutionary response of Alpine plants to climate warming. Nature Communications, 8:15399, 10.1038/ncomms15399 PDF
252- Dullinger, I., Wessely, J.,
Klonner, G., Moser, D., Gattringer, A., Kuttner, M., Essl,
F., van Kleunen, M., Thuiller, W., P.,
Pergl, J., Dawson, W., Bossdorf, O., Weigelt, P., Winter,
M., Holger, K., Dullinger, S. (2017) Climate change will
increase the naturalization risk from garden plants in
Europe. Global Ecology and Biogeography, 26, 43-53
PDF
251- Ficetola, G.F, Mazel, F., & Thuiller, W. Global determinants of zoogeographical boundaries. Nature Ecology and Evolution, 1, 0089 (published on 6 March 2017) PDF
250- Gallardo, B., Aldridge, D.C., González-Moreno, P., Perg, J., Pizarro, M., Pyšek, P., Thuiller, W., Yesson, C., & Vilà, M. (2017) Protected Areas offer refuge from invasive species spreading under climate change. Global Change Biology, 23, 5331–5343 PDF
249- Groussin, M.,
Mazel, F., Sanders, J., Smillie, C., Lavergne, S., Thuiller,
W. and Alm, E. (2017) Unraveling the processes
shaping mammalian gut microbiomes over evolutionary time.
Nature Communications, 8, 14319, doi:10.1038/ncomms14319 PDF
248- Klonner, G., Dullinger, I.,
Wessely, J., Bossdorf, O., Carboni, C. Dawson, W., Essl, F.,
Gattringer, A., Haeuser, E., van Kleunen, M., Kreft, H.,
Moser, D., Pergl, J., Pyšek, P., Thuiller, W.,
Weigelt, P., Winter, M., & Dullinger, S. (2017) Will
climate change increase hybridization risk between potential
plant invaders and their congeners in Europe? Diversity and
Distributions, 23,
934-943 PDF
247- Mazel, F., Wüest, R.O.,
Gueguen, M., Renaud, J., Ficetola, G.F., Lavergne, S. &
Thuiller, W. (2017) The geography of
ecological niche evolution in mammals. Current Biology,
27, 1369-1374
http://dx.doi.org/10.1016/j.cub.2017.03.046
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246- Mazel, F., Wüest, R.O,
Renaud, J., Lessard, J.-P., Ficetola, F.G., Lavergne, S.,
& Thuiller, W. Global patterns of
β-diversity along the phylogenetic timescale: the role of
climate and plate tectonics. Global Ecology and
Biogeography, 26,
245- Pollock, L.J., Thuiller, W. & Jetz, W. Large conservation gains possible for global biodiversity facets. Nature, 546, 141-144 PDF
244- Roberts, D.R., Bahn, V.,
Ciuti, S., Boyce, M.S., Elith, J., Guillera-Arroita, G.,
Hauenstein, S., Lahoz-Monfort, J.J., Schröder, B., Thuiller,
W., Warton, D.I., Wintle, B.A., Hartig, F. &
Dormann, G.F. Cross-validation strategies for data with
temporal, spatial, hierarchical, or phylogenetic structure.
Ecography, 40,
243- Smycka, J., Roquet, C., Renaud, J., Thuiller, W., Zimmermann, N.E. & Lavergne, S. Disentangling drivers of plant endemism and diversification in the Alps - a phylogenetic and spatially explicit approach. Perspectives in Plant Ecology, Evolution and Systematics, 28, 19-27 PDF
242- Spake, R., Lasseur, R., Crouzat, E., Bullock, J., Lavorel, S., Parks, K., Schaafsma, M., Bennett, E., Maes, J., Mulligan, M., Mouchet, M., Peterson, G., Schulp, C., Thuiller, W., Turner, M., Verburg, P. & Eigenbrod, F. (2017) Unpacking ecosystem service bundles: towards predictive mapping of synergies and trade-offs between ecosystem services. Global Environmental Change, 47, 37-50 PDF
241- Talluto, M.V., Boulangeat, I., Vissault, S., Thuiller, W. & Gravel, D. Extinction debt and colonization credit delay range shifts of eastern North American trees. Nature Ecology and Evolution, 1, 0182 PDF
240- Titeux, N., Maes, D., Van
Daele, T., Onkelinx, T., Heikkinen, R.K., Benito, H.R.,
García-Barros, E., Munguira, M.L., Thuiller, W.,
van Swaay, C.A.M, Schweiger, O., Settele, J., Harpke, A.,
Wiemers, M., Brotons, L., & Luoto, M. The need for
large-scale distribution data to estimate regional changes
in species richness under future climate change. Diversity
and Distributions, 23, 1393-1407
PDF
239- Violle, C., Thuiller, W., Mouquet, N., Munoz, F., Kraft, N.J.B., Cadotte, M.W., Livingstone, S.W. & Mouillot, D. (2017) Functional rarity: the ecology of outliers. Trends in Ecology and Evolution, 32, 356-367 PDF
238- Violle, C., Thuiller, W., Mouquet, N., Munoz, F., Kraft, N.J.B., Cadotte, M.W., Livingstone, S.W., Grenie, M. & Mouillot, D. A common toolbox to understand, monitor or manage rarity? A response to Carmona et al. Trends in Ecology and Evolution, 32 (12) 891-893 PDF
237- Zhang, J., Nielsen, S.E., Chen, Y., Georges, D., Qin, Y., Wang, S., Svenning, J.C. and Thuiller, W. (2017) Extinction risk of North American seed plants elevated by climate and land-use. Journal of Applied Ecology, 54, 303–312 PDF
236- Barros, C., Thuiller, W., Georges, D., Boulangeat, I., & Münkemüller, T. N-dimensional hypervolumes to study stability of complex ecosystems. Ecology Letters, 19, 729-742 PDF SuppInfo
235- Bellard, C., Leroy, B., Thuiller, W., Rysman, J.-F. & Courchamp, F. Major drivers of invasion risks throughout the world. Ecosphere 7(3):e01241. 10.1002/ecs2.1241 PDF
234- Carboni, M., Münkemüller, T., Lavergne, S., Choler, P., Borgy, B., Violle, C., Essl, F., Roquet, C., Munoz, F., DivGrass Consortium, & Thuiller, W. What it takes to invade grassland ecosystems: traits, introduction history and filtering processes. Ecology Letters, 19, 219-229 PDF SuppInfo
233- Ficetola, G.F, Colleoni, E., Renaud, J., Scali, S., Padoa-Schioppa, E., and Thuiller, W. Morphological variation in salamanders and their potential response to climate change. Global Change Biology, 22, 2013-2424 PDF232- Gallien, L., Thuiller,
W., Fort, N. Boleda, M. Alberto, F.J., Rioux, D.,
Lainé, J. & Lavergne, S. Is there any evidence for
rapid, genetically-based, climatic niche expansion in the
invasive common ragweed? Plos One, 11(4), e0152867 PDF
231- Gravel, D., Albouy, C. &
Thuiller, W. The meaning of functional
trait structure and diversity to food web dynamics.
Philosophical Transactions of the Royal Society B:
Biological Sciences, 371, 20150268 PDF
230- Kirchheimer, B., Schinkel,
C.C.F., Dellinger, A.S., Klatt, S., Moser, D., Winkler, M.,
Lenoir, J., Caccianiga, M., Guisan, A., Nieto-Lugilde, D.,
Svenning, J.-C., Thuiller, W., Vittoz, P.,
Willner, W., Zimmermann, N.E., Hörandl, E., and Dullinger,
S. A matter of scale: Apparent niche differentiation of di-
and tetraploid plants may depend on extent and grain of
analysis. Journal of Biogeography, 43, 716-726 PDF
229- Kukkala, A., Arponena, A.,
Maiorano, L., Moilanen, A., Thuiller, W.,
Toivonen, T., Zupan, L., Brotons, L., and Cabeza, M. Matches
and mismatches between national and EU-wide priorities:
examining the potential of the Natura 2000 network in
species conservation. Biological Conservation, 198,
193-201 PDF
228- Mazel, F., Davies, T.J, Gallien L., Groussin, M., Münkemüller T. & Thuiller, W. Influence of tree shape and evolutionary time-scale on phylogenetic diversity metrics. Ecography, 39, 913-920 PDF
227- Mazel, F., Davies, T.J., Georges, D., Lavergne, S., Thuiller, W. & Perez-Neto, P.R. Improving phylogenetic regression under complex evolutionary models. Ecology, 97, 286-293 PDF
226- Mouillot, D., Parravicini,
V., Bellwood, D.R., Leprieur, F., Huang, D., Cowman, P.F.,
Albouy, C., Hughes, T.P., Thuiller, W.,
Guilhaumon, F. (2016) Global marine protected areas fail to
secure the Tree of Life on coral reefs. Nature
Communications, 7, 10359 PDF
225- Roquet, C., Coissac, E.,
Cruaud, C., Boleda, M., Boyer, F., Alberti, A., Gielly, L.,
Taberlet, P., Thuiller, W., Van Es, J.,
& Lavergne, S. (2016) Understanding the evolution of
holoparasitic plants: the complete plastid genome of the
holoparasite Cytinus hypocistis (Cytinaceae).
Annals of Botany, 118,
224- Talluto, M., Boulangeat, I., Ameztegui, A., Aubin, I., Berteaux, D., Butler, A., Doyon, F., Drever, C.R., Fortin, M.-J., Franceschini, T., Liénard, J., McKenney, D., Solarik, K.A., Strigul , N., Thuiller, W. and Gravel, D. (2016) Cross-scale integration of knowledge for predicting species ranges: a metamodeling framework. Global Ecology and Biogeography, 25(2) 238-249 DOI: 10.1111/geb.12395 PDF SI Code
223- Zurell, D., Thuiller, W., Pagel J., Cabral, J.S., Münkemüller, M., Gravel, D., Dullinger, S., Normand, S., Schiffers, K.H., Moore, K.A., Zimmermann, N.E. (2016) Benchmarking novel approaches for modelling species range dynamics. Global Change Biology, 22, 2651–2664 PDF
222- Andrello, M., Mouillot, D., Somot, S., Thuiller, W. & Manel, S. (2015) Additive effects of climate change on connectivity among marine protected areas and larval supply to fished areas. Diversity and Distributions, 21, 139-150 PDF
221- Andrello, M., Nilsson
Jacobi, M., Manel, S., Thuiller, W. &
Mouillot, D. (2015) Extending networks of protected areas to
optimize connectivity and population growth rate. Ecography,
38: 273–282, doi: 10.1111/ecog.00975 PDF
220- Carlson, B.Z., Choler, P., Renaud, J., Dedieu, J.-P., & Thuiller, W. Modelling snow cover duration improves predictions of functional and taxonomic diversity for alpine plant communities. Annals of Botany, 116, 1023-1034 PDF
219- Chalmandrier, L., Münkemüller, T., Devictor, V., Lavergne, S. & Thuiller, W. (2015) Decomposing changes in phylogenetic and functional diversity over space and time. Methods in Ecology and Evolution, 6, 109-118 PDF
218- Chalmandrier, L., Münkemüller, T., Lavergne, S. & Thuiller, W. Effects of species' similarity and dominance on the functional and phylogenetic structure of a plant meta-community. Ecology, 96, 143-153 PDF
217- Gallien, L., Mazel, F., Lavergne, S., Roquet, C., Renaud, J., Douzet, R. & Thuiller, W. Contrasting the effects of environment, dispersal and biotic interactions to explain the distribution of invasive plants in alpine communities. Biological Invasions, 17, 1407-1423 PDF
216- Mazel, F., Renaud, J., Guilhaumon, F., Mouillot, D., Gravel, D. & Thuiller, W. (2015) Mammalian phylogenetic diversity-area relationships at a continental scale. Ecology, 96(10), 2814-2822 PDF
215- Meller, L., Thuiller, W., Pironon, S., Barbet-Massin, M., Hof, A., & Cabeza, M. (2015) Balance between climate change and bioenergy: conservation implications for European birds. Global Change Biology - Bioenergy, 7, 741-751 PDF
214- Mouchet, M.A., Levers, C., Zupan, Z., Kuemmerle, T., Plutzar, C., Erb, K., Lavorel, S., Thuiller, W., Haberl, H. Testing the effectiveness of environmental variables to explain European terrestrial vertebrate species richness across biogeographical scales. Plos One, 10 (7) e0131924. PDF
213- Mouquet, N., Lagadeuc, Y., Devictor, V., Doyen, L., Duputié, A., Eveillard, D., Faure, D., Garnier, E., Gimenez, O., Huneman, P., Jabot, F., Jarne, P., Joly, D., Julliard, R., Kéfi, S., Kergoat, G.J., Lavorel, S., Le Gall, L., Meslin, L., Morand, S., Morin, X., Morlon, H., Pinay, G., Pradel, R., Schurr, F.M., Thuiller, W., & Loreau, M. Predictive ecology in a changing world. Journal of Applied Ecology, 52, 1293-1310 PDF
212- Münkemüller,T., Boucher, F., Thuiller, W., and Lavergne, S. (2015) Phylogenetic niche conservatism - common pitfalls and ways forward. Functional Ecology, 29, 627-639 PDF
211- Nieto-Lugilde, D., Lenoir,
J., Abdulhak, S., Aeschimann, D., Dullinger, S., Gégout,
J.-C., Guisan, A., Pauli, H., Renaud, J., Theurillat, J.-P.,
Thuiller, W. Van Es, J.,
Vittoz, P., Willner, W., Wohlgemuth, T., Zimmermann, N.E.,
& Svenning, J.-C. Tree cover at fine and coarse spatial
grains interacts with shade tolerance to shape plant species
distributions across the Alps. Ecography, 38,
578-589 doi: 10.1111/ecog.00954 PDF
210-
Thuiller, W., Maiorano, L., Mazel, F., Guilhaumon,
F., Ficetola, G.F., Lavergne, S., Renaud, J., Roquet, C. and
Mouillot, D. 2015. Conserving the functional and
phylogenetic trees of life of European tetrapods.
Philosophical Transactions of the Royal Society B:
Biological Sciences, 20140005.
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209- Thuiller, W., Pollock, L.J., Gueguen, M. and Münkemüller, T. From species distributions to meta-communities. Ecology Letters, 18, 1321-1328, doi: 10.1111/ele.12526 PDF Appendices
208- Wasof, S., Lenoir, J., Aarrestad, P.A., Alsos, I.G., Armbruster, W.S., Austrheim, G., Bakkestuen, V., Birks, H.J.B., Bråthen, K.A., Broennimann, O., Brunet, J., Bruun, H.H., Dahlberg, C.J., Dieckmann, M., Dullinger, S., Dynesius, M., Ejrnæs, R., Gégout, J.-C., Graae, B.J., Grytnes, J.A., Guisan, A., Hylander, K., Jónsdóttir, I.S., Kapfer, J., Klanderud, K., Luoto, M., Milbau, A., Moora, M., Nygaard, B., Odland, A., Pauli, H., Ravolainen, V., Reinhardt, S., Sandvik, S.M., Schei, F.H., Speed, J., Svenning, J.-C., Thuiller, W., Tveraabak, L.U., Vandvik, V., Velle, L.G., Virtanen, R., Vittoz, P., Willner, W., Wohlgemuth, T., Zimmermann, N.E., Zobel, M., Decocq, G. Disjoint populations of European vascular plant species keep the same climatic niches. Global Ecology and Biogeography, 24 (12) 1401-1412 PDF
207- Zhang, J., Nielsen, S.E.,
Stolar, J., Chen, Y. and Thuiller, W.
Gains and losses of plant species and phylogenetic diversity
for a northern high-latitude region. Diversity and
Distributions, 21, 1441-1454 PDF
206- Bellard, C., Leclerc, C., Leroy, B., Bakkeness, M., Veloz, S., Thuiller, W. & Courchamp, F. (2014) Vulnerability of biodiversity hotspots to global change. Global Ecology and Biogeography, 23, 1376-1386 PDF
205- Boucher, F., Thuiller, W., Davies, J.T. & Lavergne, S. (2014) Neutral biogeography and the evolution of climatic niches. The American Naturalist, 183, 573-584 PDF
204- Boulangeat, I., Georges, D., Dentant, C., Bonet, R., Van Es J., Abdulhak, S., Zimmermann, N. & Thuiller W. (2014) Anticipating the spatio-temporal response of plant diversity and vegetation structure to climate and land use change in a protected area. Ecography, 37, 1230–1239 PDF
203- Boulangeat, I. Georges, D. & Thuiller, W. (2014) FATE-HD: A spatially and temporally explicit integrated model for predicting the vegetation structure and diversity at regional scale. Global Change Biology, 20, 2368-2378 PDF
202- Carlson, B.Z., Choler, P., Delestrade, A., Gardent, M., Georges, D., Rabatel, A., Randin, C., Renaud, J., Zimmermann, N.E. & Thuiller, W. (2014) Accounting for treeline shift, glacier retreat and primary succession in mountain plant distribution models. Diversity and Distributions,20, 1379-1391 PDF
201- Dray, S., Choler, P., Dolédec, S., Peres-Neto, P.R., Thuiller, W., Pavoine, S., ter Braak, C.J.F. (2014) Combining the fourth-corner and the RLQ methods for assessing the trait responses to environmental variation. Ecology, 95, 14-21 PDF
200- Fernandes, R.F., Vicente,
J.R., Georges, D., Alves, P., Thuiller,
W. & Honrado, J.P. (2014) A novel downscaling
approach to predict plant invasions and improve local
conservation actions. Biological Invasions, 16, 2577-2590 PDF
199- Gimenez, O., Buckland, S.T., Morgan, B.J.T., Bez, N., Bertrand, S., Choquet, R., Dray, S., Etienne, M.-P., Fewster, R., Gosselin, F., Mérigot, B., Monestiez, P., Morales, J., Mortier, F., Munoz, F., Ovaskainen, O., Pavoine, S., Pradel, R., Schurr, F.M., Thomas, L., Thuiller, W., Trenkel, V., de Valpine P., Rexstad, E. (2014) Statistical ecology comes of age. Biology Letters, 10, 20140698
198- Homolová, L., Schaepman, M.E., Lamarque, P., Clevers, J.G.P.W., de Bello, F., Thuiller, W. & Lavorel, S. Comparison of remote sensing and plant trait-based modelling to predict ecosystem services in subalpine grasslands. Ecosphere, 5, 100. PDF
197- Lung, T., Meller, L., van Teeffelen, A., Thuiller, W. & Cabeza, M. (2014) Biodiversity funds and conservation needs in the EU under climate change. Conservation Letters, 7, 390-400 PDF
196- Mazel, F., Guilhaumon, F., Mouquet, N., Devictor, V., Gravel, D., Renaud, J., Cianciaruso, M.V., Loyola, R.D., Diniz-Filho, J.A.F., Mouillot, D. & Thuiller, W. (2014) Multifaceted diversity-area relationships reveal global hotspots of mammalian species, trait and lineage diversity. Global Ecology and Biogeography, 23, 836–847 PDF
195- Meller, L., Cabeza, M., Pironon, S., Barbet-Massin, M., Maiorano, L. & Thuiller, W. (2014) Ensemble distribution models in conservation prioritization: from consensus predictions to consensus reserve networks. Diversity and Distributions, 20, 309-321 PDF
194- Merow, C., Smith, M.J., Thuiller, W., Zimmermann, N.E., Edwards, Jr., T.C., Guisan, A., Normand, S., Wüest, R., & Elith, J. What do we gain from simplicity versus complexity in species distribution models? Ecography, 37, 1267–1281 PDF
193- Monnet, A.-C., Jiguet, F., Meynard, C.N., Mouillot, D., Mouquet, N., Thuiller, W. & Devictor, V. (2014) Asynchrony of taxonomic, functional, and phylogenetic diversity in birds. Global Ecology and Biogeography, 23, 780-788 PDF
192- Münkemüller,T., Gallien, L., Lavergne, S., Renaud, J., Roquet, C., Dullinger, S., Guisan, A., Lenoir, J., Svenning, J.-C., Vittoz, P., Willner, W., Wohlgemuth, T., Zimmermann, N.E. and Thuiller, W. (2014) Scale decisions can reverse conclusions on community assembly processes. Global Ecology and Biogeography 23, 620-632 DOI: 10.1111/geb.12137 PDF
191- Pearman, P.B., Lavergne, S., Roquet, C, Wuest, R., Zimmerman, N.E., & Thuiller, W. (2014) Phylogenetic patterns of climatic, habitat and trophic niches in a European avian assemblage. Global Ecology and Biogeography, 23, 414-424 PDF
190- Pottier, J. Malenovský, Z.,
Psomas, A., Homolová, L., Schaepman, M.E., Choler, P., Thuiller,
W., Guisan, A. & Zimmermannn, N.E. (2014)
Modelling plant species distribution and diversity in alpine
grasslands using airborne imaging spectroscopy. Biology
Letters, 10, 20140347 PDF
189- Roquet, C., Lavergne, S.
& Thuiller. W. (2014) One tree to link
them all: a phylogenetic dataset for the European Tetrapoda.
PLOS Currents Tree of Life. 2014 Aug 8. Edition 1. doi:
10.1371/currents.tol.5102670fff8aa5c918e78f5592790e48 PDF
188- Schiffers, K., Schurr, K.M., Travis, J.M.J, Duputié, A., Eckhart, V.M., Lavergne, S., McInerny, G., Moore, K., Pearman, P.B., Thuiller, W., Wüest, R. & Holt, R.D. (2014) Landscape structure and genetic architecture jointly impact rates of niche evolution. Ecography, 37, 1218–1229 PDF
187- Schulp, C.J.E., Thuiller W., Verburg, P.H. Wild food in Europe: a synthesis of knowledge and data of terrestrial wild food as an ecosystem service. Ecological Economics. 105, 292-305 PDF SuppMat
181- Svenning, J.C., Gravel, D., Holt, R.D., Schurr, F.M., Thuiller, W., Dullinger, S., Hickler, T., Higgins, S., Münkemüller, T., Nabel, J., Pagel, J., Schiffers, K., & Normand, S. (2014) The influence of biotic interactions on species range expansion rates. Ecography, 37, 1198–1209 PDF
186- Thuiller, W. (2014) Editorial commentary on “BIOMOD – optimizing predictions of species distributions and projecting potential future shifts under global change" Global Change Biology, 20, 3591–3592 PDF
185- Thuiller, W. (2014) Editorial commentary on “Patterns and uncertainties of species’ range shifts under climate change". Global Change Biology, 20, 3593–3594 PDF
184- Thuiller, W., Guéguen, M., Georges, D., Bonet, R., Chalmandrier, L., Garraud, L., Renaud, J., Roquet, C., Van Es, J., Zimmermann, N.E. & Lavergne, S. (2014) Are different facets of plant diversity well protected against climate and land use changes? A test study in the French Alps. Ecography, 37, 1254–1266 PDF SuppMat
183- Thuiller, W., Münkemüller, T., Schiffers, K.H., Georges, D., Dullinger, S., Eckhart, V.M., Edwards, T.C., Gravel, D., Kunstler, G., Merow, C., Moore, K., Piedallu, C., Vissault, S., Zimmermann, N.E., Zurell, D. and Schurr, F.M. (2014) Does probability of occurrence relate to population dynamics? Ecography, 37, 1155–1166 SuppMat PDF
182- Thuiller, W., Pironon, S., Psomas, A., Barbet-Massin, M., Jiguet, F., Lavergne S., Pearman, P.B., Renaud, J., Zupan, L. and Zimmermann, N.E. (2014) The European functional tree of bird life in face of global change. Nature Communications, 5, 3118 DOI: 10.1038/ncomms4118 PDF
180- Zupan, L., Cabeza, M., Maiorano, L., Roquet, C., Devictor, V., Lavergne, S., Mouillot, D., Mouquet, N., Renaud, J. & Thuiller, W. (2014) Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe. Diversity and Distributions, 20, 674-685 PDF SuppMat
179- Andrello, M., Mouillot, D.,
Beuvier, J., Albouy, C., Thuiller, W.
& Manel, S. (2013) Low Connectivity between
Mediterranean Marine Protected Areas: A Biophysical Modeling
Approach for the Dusky Grouper Epinephelus marginatus. PLoS
ONE, 8, e68564. PDF
178- Bellard, C., Thuiller, W., Leroy, B., Genovesi, P., Bakkenes, M. & Courchamp, F. (2013) Will climate change promote future invasions? Global Change Biology 19: 3740–3748 PDF
177- Bi, Y.-F., Xu, J.-C., Li, Q.-H., Guisan , A., Thuiller, W., Zimmerman, N.E., Yang, Y.-P. & Yang, X.-F. (2013) Applying BioMod for Model Ensemble in Species Distributions: a Case Study for Tsuga chinensis in China. Plant Diversity and Resources, 35, 647-655. PDF
176- Boucher, F.,
Thuiller, W., Arnoldi, C., Albert, C.H., Lavergne,
S., (2013) Unravelling the architecture of functional
variability in wild populations of Polygonum
viviparum L. Functional Ecology, 27, 382–391 PDF
175- Cabral, J.C., Jeltsch, F., Thuiller,
W., Higgins, S., Midgley, G.F., Rebelo, A.G.,
Rouget, M., & Schurr, F.M. (2013) Impacts of past
habitat loss and future climate change on the range dynamics
of South African Proteaceae, Diversity and Distributions,
19, 363-376 PDF
174- Carlson, B.Z., Randin, C.F., Boulangeat, I., Lavergne, S., Thuiller, W. & Choler, P. (2013) Working toward integrated models of alpine plant distribution. Alpine Botany, 123: 41-53 PDF
173- Chalmandrier, L., Münkemüller, T., Gallien, L., de Bello, F., Mazel, F., Lavergne, S., Thuiller, W. (2013) A family of null models to distinguish between habitat filtering and biotic interactions in functional diversity patterns. Journal of Vegetation Science, 24: 853–864 PDF
172- Carboni, M. Münkemüller, T.,
Gallien, L., Lavergne, S., Acosta, A., & Thuiller,
W. (2013) Darwin’s naturalization hypothesis: scale
matters in coastal plant communities. Ecography 36: 560–568
PDF
171- de Bello, F., Lavorel, S.,
Lavergne, S., Albert, C.H., Boulangeat, I., Mazel, F. &
Thuiller, W. (2013)
Hierarchical effects of environmental filters on the
functional structure of plant communities: a case study in
the French Alps. Ecography, 36, 393-402 PDF
170- Dortel E., Thuiller W., Lobo J.M., Bohbot H., Lumaret J.P., Jay-Robert P. (2013) Potential effects of climate change on the distribution of Scarabaeidae dung beetles in Western Europe. Journal of Insect Conservation, 17, 1059-1070 PDF
169- Kharouba, H., McCune, J.L.,
Thuiller, W. & Huntley, B.
(2013) Do ecological differences between taxonomic groups
influence the relationship between species’ distributions
and climate? A global meta-analysis using species
distribution models. Ecography, 36, 657-664
PDF
168- Lavergne, S., Evans, M.E.K,
Burfield, I.J., Jiguet, F. & Thuiller.W.
(2013) Are species’ responses to global change predicted by
past niche evolution? Philosophical Transactions of the
Royal Society B: Biological Sciences, 368, 1610, 20120091;
doi:10.1098/rstb.2012.0091 PDF
SuppMat
167- Lyet, A., Thuiller,
W., Cheylan, M., Besnard, A. (2013) Fine-scale
regional distribution modelling of rare and threatened
species: bridging GIS Tools and conservation in practice.
Diversity and Distributions, 19: 651-663 PDF
166- Meynard, C., Lavergne, S.,
Boulangeat, I., Garraud, L., Van Es, J., Mouquet, N. & Thuiller,
W. (2013) Disentangling the drivers of
metacommunity structure across spatial scales. Journal of
Biogeography, 40: 1560-1571 PDF
165- Mouillot, D., Bellwood,
D.R., Baraloto, C., Chave, J., Galzin, R., Harmelin-Vivien,
M., Kulbicki, M., Lavergne, S., Lavorel, S., Mouquet, N.,
Paine, C.E.T., Renaud, J. & Thuiller
W. (2013) Rare
species support vulnerable functions in high-diversity
ecosystems. Plos Biology, 11: e1001569.
doi:10.1371/journal.pbio.1001569 PDF
164- Pellissier, L., Brathen, K.A., Vittoz, P., Yoccoz, N.G., Dubuis, A., Meier, E.S., Zimmermann, N.E., Randin, C.F., Thuiller, W., Garraud, L., Van Es, J., Guisan, A. (2013) Thermal niches are more conserved at cold than warm limits in arctic-alpine plant species. Global Ecology and Biogeography, 22, 933-941 PDF
163- Roquet, C., Thuiller,
W. & Lavergne, S. (2013) Building
megaphylogenies for macroecology: taking up the challenge.
Ecography, 36, 13-26 PDF
SupppMat
162- Roquet, C., Boucher, F.C, Thuiller, W. & Lavergne, S. (2013) Replicated radiations of the alpine genus Androsace (Primulaceae) driven by range expansion and convergent key innovations. Journal of Biogeography, 40: 1874-1886 PDF
161- Schiffers, K., Bourne, E.C.,
Lavergne, S., Thuiller, W.
& Travis, J.M.J. (2013) Limited evolutionary rescue of
locally adapted populations facing climate change.
Philosophical Transactions of the Royal Society B:
Biological Sciences, 368, 1610, 20120083,
doi:10.1098/rstb.2012.0083 PDF
SuppMat
Code
160- Thuiller,
W., Münkemüller, T, Lavergne, S., Mouillot, D.,
Mouquet, N., Schiffers, K. & Gravel, D. (2013) A road
map for integrating eco-evolutionary processes into
biodiversity models. Ecology Letters, 16, 94-105 PDF
159- Thuiller, W. (2013) On the importance of edaphic variables to predict plant species distributions - limits and prospects. Journal of Vegetation Science, 24: 591-592 PDF
158- Trivino, M., Cabeza, M., Thuiller, W. Hickler, T. & Araujo, MB. (2013) Risk assessment for Iberian birds under global change. Biological Conservation, 168: 192-200 PDF
157- Albert, C.H., de Bello, F.,
Boulangeat, I., Pellet, G., Lavorel, S. & Thuiller,
W. (2012) On the importance of intraspecific
variability for the quantification of functional diversity.
Oikos, 121, 116-126 PDF
156- Alsos, I.G., Ehrich, D., Thuiller,
W., Eidesen, P.B., Tribsch, A., Schönswetter, P.
Lagaye, C., Taberlet, P., Brochmann, C. (2012) Genetic
consequences of climate change induced range reduction in
northern plants. Proceedings of the Royal Society B:
Biological Sciences, 279, 2042-2051 PDF
155- Barbet-Massin, M., Jiguet,
F., Albert, C.H. & Thuiller, W.
(2012) Selecting pseudo-absence for species distribution
models: how, where and how many? Methods in Ecology and
Evolution, 3, 327-338 PDF
154- Barbet-Massin, M., Thuiller,
W., & Jiguet, F. (2012) The fate of European
breeding birds under climate, land-use and dispersal
scenarios. Global Change Biology, 18, 881–890 PDF
153- Bellard, C., Bertelsmeier,
C., Leadley, P., Thuiller, W.
& Courchamp, F. (2012) Effects of climate change on the
future of biodiversity. Ecology Letters, 15, 365-377 PDF
152- Boucher, F., Thuiller,
W., Roquet, C., Douzet, R., Aubert, S., Alvarez, N.
& Lavergne, S. (2012) Reconstructing the origin of
high-alpine niches and cushion life form in the genus Androsace
(Primulaceae). Evolution, 66, 1255–1268, PDF
151- Boulangeat, I., Gravel, D.
and Thuiller, W. (2012)
Accounting for dispersal and biotic interactions to
disentangle the drivers of species distributions and their
abundances. Ecology Letters, 15, 584-593 PDF
SuppMat
150- Boulangeat, I., Lavergne,
S., Van Es, J., Garraud, L. Thuiller,
W. (2012) Niche breadth, rarity and ecological
characteristics within a regional flora spanning large
environmental gradients. Journal of Biogeography, 39 204-241
PDF
149- Boulangeat, I., Philippe,
P., Abdulhak, S., Douzet, R., Garraud, L., Lavergne, S.,
Lavorel, S., Van Es J., Vittoz, P. & Thuiller,
W. (2012) Optimising plant functional groups for
dynamic models of biodiversity: at the crossroad between
functional and community ecology. Global Change Biology, 18,
3464-3475. PDF
148- Broennimann, O.,
Fitzpatrick, M., Pearman, P.B., Pelissier, L., Petit-Pierre,
B., Yoccoz, N.G., Thuiller, W.,
Fortin, M.J., Randin, C., Zimmermann, N.E., Graham, C.H.
& Guisan , A. (2012) Measuring ecological niche overlap
from occurrence and spatial environmental data. Global
Ecology and Biogeography, 21 481-497 PDF
147- Cheaib, A., Badeaub, V.,
Boe, J., Chuine, I., Delire, C., Dufrêne, E., François, C.,
Grittid, E.S., Legay, M., Pagé, C., Thuiller,
W., Viovy, N., and Leadley, P. (2012) Climate
change impacts on tree ranges: model inter-comparison
facilitates understanding and quantification of uncertainty.
Ecology Letters, 15, 533-544 PDF
SuppMat
146- de Bello, F., Price, J.N.,
Münkemüller, T., Zobel, M., Thuiller,
W., Gerhold, P., Götzenberger, L., Lavergne, S.,
Lepš, I., Liira, J., Zobel, K., Pärtel, M. (2012) Functional
species pool framework to test for biotic effects on
community assembly. Ecology, 93, 2263-2273 PDF
145- Dullinger, S., Gattringer,
A., Thuiller, W.,
Moser, D., Zimmermann, N.E., Guisan, A., Willner, W.,
Plutzar, C., Leitner, M., Mang, T., Caccianiga, M.,
Dirnböck, T., Ertl, S., Fischer, A., Lenoir, J., Svenning,
J.-C., Psomas, A., Schmatz, D.R., Silc, U., Vittoz, P.,
& Hülber, K. (2012) Extinction debt of high-mountain
plants under twenty-first-century climate change. Nature
Climate Change, 2, 619-622 PDF
SupplementaryMaterials
144- Civantos, E., Thuiller,
W., Maiorano, L., Guisan, A., & Araujo, M.B.
(2012) Potential impacts of climate change on ecosystem
services in Europe: the case of pest control by vertebrates.
BioScience, 52, 658-666 PDF
143- Gallien, L., Douzet, R.,
Pratte, S., Zimmermann, N.E., Thuiller,
W. (2012) Invasive species distribution models -
how violating the equilibrium assumption can create new
insights? Global Ecology and Biogeography, 21, 1126-1136 PDF
142- Gasso, N., Thuiller,
W., Pino, J. & Vilà, M. (2012) Potential
distribution range of invasive species in Spain. Neobiota,
12, 25-40 PDF
141- Jay, F., Manel, S., Alvarez,
N., Durand, E., Thuiller, W.,
Holderregger, R., Taberlet, P. François, O. (2012)
Forecasting changes in population genetic structure of
Alpine plants in response to global warming. Molecular
Ecology, 21, 2354-2368 PDF
140- Kleyer M., Dray S., de Bello
F., Leps I., Meier T., Pakeman R.J., Strauss B., Thuiller
W. & Lavorel S. 2012. Assessing species and
community functional responses to environmental gradients:
which multivariate methods? Journal of Vegetation Science,
23, 805-821 PDF,
Appendix1,
Appendix2,
Appendix3,
Appendix4
139- Kramer, K., Bijlsma, R.-K.,
Hickler, T. & Thuiller, W.
Why would plant species become extinct locally if growing
conditions improve? International Journal of Biological
Sciences, 8(8) 1121-1129 PDF
138- Kunstler, G., Lavergne, S.,
Courbaud, B., Thuiller, W.,
Vieilledent, G., Zimmermann, N.E., Kattge, J. & Coomes,
D.A. (2012) Competitive interactions between forest trees
are driven by species' trait hierarchy, not phylogenetic or
functional similarity: implications for forest community
assembly. Ecology Letters. 15 (8) 831-840 PDF
137- Manel, S., Gugerli, F., Thuiller,
W., Alvarez, N., Holderegger, R., Legendre, P.,
Gielly, L., Taberlet, P. & Intrabiodiv consortium.
(2012) Broad-scale adaptive genetic variation in alpine
plants is mainly driven by temperature and precipitation.
Molecular Ecology, 21, 3729–3738 PDF
136- Mouquet, N., Devictor, V.,
Meynard, C.N., Munoz, F., Bersier, L.-F., Chave, J.,
Couteron, P., Dalecky, A., Fontaine, C., Gravel, D., Hardy,
O.J., Jabot, F., Lavergne, S., Leibold, M., Mouillot, D.,
Münkemüller, T., Pavoine, S., Prinzing, A., Rodrigues,
A.S.L., Rohr, R.P., Thébault, E., Thuiller,
W. (2012) Ecophylogenetics: advances and
perspectives. Biological Reviews, 87, 769-785 PDF
135- Münkemüller, T., de Bello,
F., Meynard, C. N., Gravel, D., Lavergne, S., Mouillot, D.,
Mouquet, N. & Thuiller, W. (2012)
From diversity indices to community assembly
processes: a test with simulated data. Ecography, 35,
468-480. 10.1111/j.1600-0587.2011.07259.x PDF
134- Münkemüller, T., Lavergne,
S., Bzeznik, B., Dray, S., Jombart, T., Schiffers, K. &
Thuiller, W. (2012) How to
measure and test phylogenetic signal? Methods in Ecology and
Evolution, 3, 743-756 PDF
SuppMat
133- Rolland, J., Cadotte, M.W.,
Davies, J., Devictor, V., Lavergne, S., Mouquet, N.,
Pavoine, S., Rodrigues A., Thuiller,
W., Turcati, L., Winter, M., Zupan, L., Jabot, F.
& Morlon, H. (2012) Using phylogenies in conservation:
new perspectives. Biology Letters. 8, 692-694 PDF
132- Thuiller,
W., Gassó, N., Pino, J. & Vilà, M. (2012)
Ecological niche and species traits: key drivers of regional
plant invader assemblages. Biological Invasions, 14,
1963-1980 PDF
131- Yoccoz, N.G., Bråthen, K.A.,
Gielly, L., Haile, J., Edwards, M.E., Goslar, T., von
Stedingk, H., Brysting, A.K., Coissac, E., Pompanon, F.,
Sønstebø, J.H., Miquel, C., Valentini, A., de Bello, F.,
Chave, J., Thuiller, W.,
Rasmussen, M., Gilbert, M.T.P., Orlando, L., Brochmann, C.,
Willerslev, E., Taberlet, P. (2012) DNA from soil mirrors
plant taxonomic and growth form diversity. Molecular
Ecology, 21, 3647–3655 PDF
130- Araújo, M. B., Alagador, D.,
Cabeza., M, Nogués-Bravo, D. &
Thuiller, W. (2011) Effects of climate change on
European conservation areas. Ecology Letters, 14, 484-492 PDF
129- Beaumont, L.J., Pitman, A.,
Perkins, S., Zimmermann, N.E., Yoccoz, N.G. &
Thuiller, W. (2011) Impacts of climate change on
the world's most exceptional ecoregions. Proceedings of the
National Academy of Sciences, USA, 108(6) 2306-2311 PDF SuppInf
128- Cabral, J.S., Bond, W.J.,
Rebelo, A.G., Midgley, G.F., Thuiller,
W., & Schurr, F. (2011) Effects of Harvesting
Flowers from Shrubs on the Persistence and Abundance of Wild
Shrub Populations at Multiple Spatial Extents. Conservation
Biology, 25, 73-84 PDF
127- de Bello F., Lavorel
S., Albert C.H., Thuiller W.,
Grigulis K., Dolezal J., Janecek S., Leps J. (2011)
Quantifying the relevance of intraspecific trait variability
for functional diversity. Methods in Ecology and Evolution,
2, 163–174 PDF
126- Defossez, E., Courbaud, B.,
Marcais, B., Thuiller, W.,
Granda, E., & Kunstler, G. (2011) Do interactions
between plants and soil biota change with elevation? A study
on Fagus sylvatica. Biology
Letters, 7, 699-701 PDF
125- Engler, R., Randin, C., Thuiller,
W., Dullinger, S., Zimmermann, N.E., Araújo, M.B.,
Pearman, P.B., Albert, C.H., Choler, P., de Lamo, X.,
Dirnböck, T., Gómez-García, D., Grytnes, J.-A., Heegard, E.,
Høistad, F., Le Lay, G., Nogues-Bravo, D., Normand, S.,
Piédalu, C., Puscas, M., Sebastià, M.-T., Stanisci,
A., Theurillat, J.-P., Trivedi, M., Vittoz, P., and Guisan,
A. (2011) 21st century climate change threatens mountain
flora unequally across Europe. Global Change Biology,
17:2330-2341 PDF
SuppMat.
124- Kujala, H., Araújo, M.B., Thuiller,
W., & Cabeza, M. (2011) Misleading results from
conventional Gap analysis – messages from the warming North.
Biological Conservation, 144, 2450-2458 PDF
123- Kunstler, G., Albert, C.H,
Courbeau, B., Lavergne, S., Thuiller,
W., Vielledent, G., Zimmermann, N.E., Coomes, D.
(2011) Effects of competition on tree radial-growth vary in
importance but not in intensity along climatic gradients.
Journal of Ecology, 99, 300-312 PDF
122- Meynard, C.N. Devictor, V.,
Mouillot, D., Thuiller, W.,
Jiguet, F., & Mouquet, N. (2011) Beyond taxonomic
diversity patterns: how α, β and γ components of functional
and phylogenetic diversity respond to environmental
gradients across France? Global Ecology & Biogeography,
20, 893-903 PDF
121- Midgley, G.F. & Thuiller,
W. (2011). Potential responses of terrestrial
biodiversity in Southern Africa to anthropogenic climate
change. Regional Environmental Change. 11, S127-S135 PDF
120- Pio, D., Broennimann, O.,
Rebelo, A.G., Reeves, G., Barraclough, T., Thuiller,
W., Guisan, A., & Salamin, N. Spatial
predictions of phylogenetic diversity in conservation
decision making. Conservation Biology, 25: 1229-1239 PDF
119- Simberloff, D. [...], Thuiller,
W. [...] (2011) Non-natives: 141 scientists object.
Nature 475: 36-36 PDF
118- Thuiller,
W., Lavergne, S., Roquet, C., Boulangeat, I.,
Lafourcade, B. & Araújo, M.B. Consequences of climate
change on the Tree of Life in Europe. Nature, 470, 531-534 PDF
SupMat
117- Triviño, M., Thuiller,
W., Cabeza, M., Hickler, T. and Araújo, M.B. The
Contribution of Vegetation and Landscape Configuration for
Predicting Environmental Change Impacts on Iberian Birds.
Plos ONE, 6: e29373 PDF
116- Albert, C.H., Edwards, Jr.
T., Graham, C.H., Yoccoz, N.G., Zimmermann, N.E. & Thuiller,
W. (2010) Applied sampling in ecology and evolution
– integrating questions and designs. Ecography, 33,
1028-1037 PDF
115- Albert, C.H., Thuiller,
W., Yoccoz, N.G., Douzet, R., Aubert, S.
and Lavorel, S. (2010) A multi-trait approach reveals the
structure and the relative importance of intra- versus
interspecific variability. Functional Ecology, 24, 1192–1201
PDF
114- Albert, C.H., Thuiller,
W., Yoccoz, N.G., Soudan, A., Boucher, F., Saccone,
P. and Lavorel, S. (2010) Intraspecific functional
variability: extent, structure and sources of variation
within an alpine valley. Journal of Ecology. 98, 604–613 PDF
113- Barbet-Massin, M., Thuiller,
W., & Jiguet, F. How much do we overestimate
local extinction rates when restricting the range of
occurrence data in climate suitability models? Ecography.
33(5), 378-386 PDF
112- Ben Rais Lasram F,
Guilhaumon F, Albouy, C., Somot, S., Thuiller,
W. & Mouillot, D. (2010) The Mediterranean Sea
as a “cul-de-sac” for endemic fishes facing climate change.
Global Change Biology. 16: 3233–3245. PDF
111- Berteaux, D. de Blois, S.,
Angers, J.-F., Bonin, J., Casajus, N., Darveau,
M., Fournier, F., Humphries, M., McGill, B., Larivée, J.,
Logan, T., Nantel, P., Périé, C.,
Poisson, F., Rodrigue, D., Rouleau, S., Siron, R., Thuiller,
W., & Vescovi, L. The CC-Bio project: Studying
the effects of climate change on Quebec biodiversity.
Diversity, 2, 1181-1204 PDF
110- Buisson, L., Thuiller,
W., Casajus, N., Lek, S. and Grenouillet, G. (2010)
Uncertainty in ensemble forecasting of species distribution.
Global Change Biology. 16, 1145-1157 PDF
.
109- Carboni, M., Thuiller,
W., Izzi, F. & Acosta, A. (2010) Disentangling
the relative effects of environmental versus human factors
on the abundance of native and alien plant species in
Mediterranean sandy shores Diversity and Distributions, 16,
537-546 PDF
108- de Bello F., Lavergne S.,
Meynard C., Lepš I. & Thuiller W.
(2010) The spatial partitioning of diversity: showing
Theseus a way out of the labyrinth. Journal of Vegetation
Science, 21, 992-1000. PDF
107- Devictor, V., Clavel, J.,
Julliard, R., Lavergne, S., Mouillot, D., Thuiller,
W., Venail, P. Villégier, S. and Mouquet, N. (2010)
Defining and measuring ecological specialization. Journal of
Applied Ecology, 47, 15-25 PDF
106- Devictor, V., Mouillot, D.,
Meynard, C., Jiguet, F., Thuiller,
W. and Mouquet, N. (2010) Spatial mismatch and
congruence between taxonomic, phylogenetic and functional
diversity: the need for integrative conservation strategies
in a changing world. Ecology Letters, 13, 1030–1040 PDF
105- Ficetola, F., Maiorano, L.,
Falcucci, A., Dendoncker, N., Boitani, L., Padoa-Schioppa,
E., Miaud, C. & Thuiller, W.
(2010) Knowing the past to predict the future: land-use
change and the spread of invasive Bullfrogs. Global Change
Biology. 16, 528-537 PDF
104- Gallien, L., Münkemüller,
T., Albert, C.H., Boulangeat, I. & Thuiller,
W. (2010) Predicting potential distributions of
invasive species: where to go from here? Diversity and
Distributions, 16, 331-342 PDF
103- Heikkinen, R.K. Luoto, M.,
Leikola, N., Pöyry, J. Settele, J., Kudrna, O., Marmion, M.,
Fronzek, S. & Thuiller, W.
(2010) Assessing the vulnerability of European butterflies
to climate change using multiple criteria. Biodiversity and
Conservation. 19: 695–723 PDF
102- Kramer, K., Degen, B.,
Buschbom, J., Hickler, T., Thuiller,
W., Sykes, M.T., de Winter, W. (2010) Modelling
exploration of the future of European beech (Fagus
sylvatica L.) under climate change - Range,
abundance, genetic diversity and adaptive response. Forest
Ecology and Management, 259, 2213–2222 PDF
101- Lavergne, S., Mouquet, N., Thuiller,
W., Ronce, O. (2010)
Biodiversity and climate change: Integrating evolutionary
and ecological responses of species and communities. Annual
Review of Ecology, Evolution and Systematics. 41: 321-350 PDF
100- Meier, E.S., Kienast, F.,
Pearman, P.B., Svenning, J.-C., Thuiller,
W., Araújo, M.B., Guisan, A. & Zimmermann, N.E.
Biotic and abiotic variables show little overlap in
explaining tree species distribution patterns. Ecography,
33, 1038-1048 PDF
99- Midgley, G. F., Davies, I.
D., Albert, C. H., Altwegg, R., Hannah, L., Hughes, G. O.,
O'Halloran, L.R. Seo, C., Thorne, J.H. & Thuiller,
W. BioMove – an integrated platform simulating the
dynamic response of species to environmental change.
Ecography, 33, 612-616 PDF
98- Pearman, P.B., D'Amen, M.,
Graham, C.H., Thuiller, W.
& Zimmermann, N.E. Within-taxon niche structure: Niche
conservatism, divergence and predicted effects of climate
change. Ecography, 33, 990-1003 PDF
97- Poncet, B., Hermann, D.,
Gugerly, F., Taberlet, P., Holderegger, R., Gielly, L.,
Rioux, D., Thuiller, W.,
Aubert, S. & Manel, S. Temperature drives adaptive
genetic diversity in two independent regional genome scan
samples of Arabis alpina. Molecular
Ecology, 19, 2896–2907 PDF
96- Quétier, F., Rivoal, F.,
Marty, P., de Chazal, J., Thuiller, W.
Lavorel, S. Social representations of an alpine grassland
landscape and socio-political discourses on rural
development. Regional Environmental Change, 10, 119-130 PDF
95- Richardson, D.M., Iponga,
D.M., Roura-Pascual, N., Krug, R.M., Milton,
S.J., Hughes, G.O. and Thuiller, W.,
Accommodating scenarios of climate change and management in
modelling the distribution of the invasive species: Schinus
molle in South Africa. Ecography, 33, 1049-1061 PDF
94- Salamin, N., Würst, R.,
Lavergne, S., Thuiller, W.
& Pearman, P. Assessing rapid evolution in a changing
environment. Trends in Ecology and Evolution. 25(12) 692-698
PDF
93- Sérandour, J., Willison, J, Thuiller,
W., Ravanel, P., Lempérière, G., Raveton, M.
(2010) Environmental drivers for Coquillettidia mosquito
habitat selection: A method to highlight key field factors.
Hydrobiologia, 652, 377–388 PDF
92- Thuiller,
W., Albert, CH., Dubuis, A., Randin, C. &
Guisan, A. (2010) Variation in habitat suitability models do
not always relate to variation in species' plant functional
traits. Biology Letters, 6, 120:123 PDF
91- Thuiller
W., Gallien, L., Boulangeat, I., de Bello, F.,
Münkemüller, T., Roquet-Ruiz, C. & Lavergne, S. (2010)
Resolving Darwin’s naturalization conundrum: a quest for
evidence. Diversity and Distributions. 16, 461–475 PDF
90- Virkkala, R., Marmion, M.,
Heikkinen, R.K., Thuiller, W.,
Luoto, M. (2010) Predicting range shifts of northern bird
species: influence of modelling technique and topography.
Acta Oecologica. 36, 269-281 PDF
89- Anderson, B.J., Akçakaya,
H.R., Araújo, M.B., Fordham, D.A., Martinez-Meyer, E., Thuiller,
W., Brook, B.W. (2009) Dynamics of range margins
for metapopulations under climate change. Proceedings of the
Royal Society B: Biological Sciences, 276, 1415-1420 PDF
88- Araújo, M.B., Thuiller,
W. and Yoccoz, N.G. (2009) Reopening the climate
envelope reveals macroscale associations with climate in
European birds. Proceedings of the National Academy of
Sciences, USA, 106, E45-E46 PDF
87- Barbet-Massin, B., Walther,
B.A., Thuiller, W., Rahbek, C.
& Jiguet, F. (2009) Potential impacts of climate change
on the winter distribution of Afro-Palaearctic migrant
passerines. Biology Letters, 5, 248-251 PDF
86- Beaumont, L., Gallagher, R.,
Downey, P., Thuiller, W.,
Leishman, M., Hughes, L. (2009) Modelling the impact of
Hieracium spp. on protected areas in Australia under future
climates. Ecography, 32, 757-764 PDF
85- Beaumont, L. J., Gallagher,
R. V., Thuiller, W., Downey,
P. O., Leishman, M. R. & Hughes, L. (2009) Different
climatic envelopes among invasive populations may lead to
underestimations of current and future biological invasions.
Diversity and Distributions, 15, 409-420. PDF
84- Coetzee, B.W.T., Robertson,
M.P. Erasmus, B.F.N, van Rensburg, B.J.,
Thuiller, W. (2009) Ensemble models predict
Important Bird Areas in southern Africa to become less
effective for conserving endemic birds under climate change.
Global Ecology and Biogeography, 18, 701-710 PDF
83- de Bello, F., Thuiller,
W., Leps, I., Choler, P., Clément, J.-C., Macek,
P., Sebastia, M.T., Lavorel, S. Partitioning of functional
diversity reveals the scale and extent of trait convergence
and divergence. Journal of Vegetation Science, 20: 475-486 PDF
82- Ficetola, F., Thuiller,
W., Padoa-Schioppa, E. From introduction to the
establishment of alien species: bioclimatic differences
between presence and reproduction localities in the slider
turtle. Diversity and Distributions, 15, 108-116 PDF
81- Gebremedhin, B., Ficetola,
G.F., Naderi, S., Resaei, H.-R., Maudet, C., Rioux, D.,
Luikart, G., Flagstad, O., Thuiller,
W., Taberlet, P. 2009. Combining genetic and
ecological data to assess the conservation status of the
endangered Ethiopian Walia ibex. Animal Conservation, 12,
89-100 PDF
80- Gebremedhin, B., Ficetola,
G.F., Naderi, S., Resaei, H.-R., Maudet, C., Rioux, D.,
Luikart, G., Flagstad, O., Thuiller,
W., Taberlet, P., 2009. Frontiers in identifying
conservation units: from neutral markers to adaptive genetic
variation. Animal Conservation, 12, 107-109 PDF
79- Hickler, T., Fronzek, S.,
Araújo, M.B., Schweiger, O., Thuiller,
W., Sykes, M.T. An ecosystem-model-based estimate
of changes in water availability differs from water proxies
that are commonly used in species distribution models.
Global Ecology and Biogeography, 18, 304-313 PDF
78- Houniet, D., Thuiller,
W. & Tolley, K.A. Potential effects of
predicted climate change on the endemic South African Dwarf
Chameleons, Bradypodion. African
Journal of Herpetology, 58, 28-35 PDF
77- Knapp, S., Kühn, I., Bakker,
J. P., Kleyer, M., Klotz, S., Ozinga, W. A., Poschlod, P.,
Thompson, K., Thuiller, W.
& Römermann, C. (2009) How species traits and affinity
to urban land use control large-scale species frequency.
Diversity and Distributions, 15, 533-546. PDF
76- Marmion, M., Hjort, J., Thuiller,
W., Luoto, M. (2009) Statistical consensus methods
for improving predictive geomorphology maps. Computer and
Geosciences, 35, 615-625 PDF
75- Marmion, M., Luoto, M.,
Heikkinen, R.K., Thuiller, W.
(2009) The performance of state-of-the-art modelling
techniques depends on geographical distribution of species.
Ecological Modelling, 220, 3512-3520 PDF
74- Marmion, M., Parviainen, M.,
Luoto, M., Heikkinen, R.K., Thuiller,
W. (2009) Evaluation of consensus methods in
predictive species distribution modelling, Diversity and
Distributions, 15, 59-69 PDF
73- Morin, X. & Thuiller,
W. 2009 Comparing niche- and process-based models
to reduce prediction uncertainty in species range shifts
under climate change. Ecology 90, 1301–1313. PDF
72- Parker-Allié, F., Musil, C.F.
and Thuiller, W. Effects of
climate warming on the distributions of invasive european
annual grasses: a Southern African perspective. Climatic
Change, 94, 87-103 PDF
71- Parviainen, M. Marmion, M.
Luoto, M., Thuiller, W. &
Heikkinen, R.K. Using summed individual species models and
state-of-the-art modelling techniques to identify threatened
plant species hotspots. Biological Conservation, 142,
2501-2509. PDF
70- Randin, C., Engler, R.,
Normand, S., Zappa, M., Zimmermann, N.E., Pearman, P.,
Vittoz, P., Thuiller, W.,
Guisan , A. Climate change and plant distribution: local
models predict high-elevation persistence. Global Change
Biology 15: 1557-1569, doi:
10.1111/j.1365-2486.2008.01766.x PDF
69- Roura-Pascual, N., Brotons,
L., Peterson, AT, Thuiller, W. 2009.
Consensual predictions of potential distributional areas for
invasive species: a case study of Argentine ants in the
Iberian Peninsula. Biological Invasions 11:1017-1031. PDF
68- Roura-Pascual, N., Bas, J.P.,
Thuiller, W., Hui, C., Krug,
R.M., and Brotons, L. From introduction to equilibrium:
reconstructing the invasive pathways of the Argentine ant in
a Mediterranean region. Global Change Biology, 15,
2101-2115 PDF
67- Seo, C., Thorne, J., Hannah,
L. & Thuiller, W. (2009)
Scale effects in species distribution models – implications
for planning under climate change. Biology Letters, 5,
39-43 PDF
66- Thuiller,
W., Lafourcade, B., Engler, R. & Araújo, M.B.
BIOMOD - A platform for ensemble forecasting of species
distributions. Ecography, 32, 369-373 doi:
10.1111/j.1600-0587.2008.05742.x PDFmi
65- Vallecillo, S., Brotons, L.
& Thuiller, W. (2009)
Dangers of predicting bird species distributions in response
to land-cover changes. Ecological Applications, 19, 538-549
PDF
64- Walther, G.-R., Roques, A.,
Hulme, P. E., Sykes, M. T., Pysek, P., Kühn, I., Zobel, M.,
Bacher, S., Botta-Dukat, Z., Bugmann, H., Czucz, B., Dauber,
J., Hickler, T., Jarosik, V., Kenis, M., Klotz, S., Minchin,
D., Moora, M., Nentwig, W., Ott, J., Panov, V. E.,
Reineking, B., Robinet, C., Semenchenko, V., Solarz, W., Thuiller,
W., Vila, M., Vohland, K. & Settele, J. 2009
Alien species in a warmer world – risks and opportunities.
Trends in Ecology & Evolution, 24, 686-693 PDF
63- Zimmermann, Z.E., Yoccoz,
N.G., Edwards, Jr., T.C., Meier, E.C., Thuiller,
W., Guisan, A., Schmatz, D.R. and Pearman, P.B.
Climatic extremes improve predictions of spatial patterns of
tree species. Proceedings of the National Academy of
Sciences, USA. 106, 19723–19728 PDF
62- Albert, C.H. and Thuiller,
W. Favourability functions versus probability of
presence: advantages and misuses, Ecography, 31, 417-422 PDF
61- Albert, C.H., Thuiller,
W., Lavorel, S., Davies, I.D. & Garbolino, E.
Land use change and sub-alpine tree dynamics: colonisation
of Larix decidua in French sub-alpine grasslands. Journal of
Applied Ecology, 45, 659–669 PDF
60- Barnard, P. & Thuiller,
W. Global change and biodiversity: future
challenges. Biology Letters, 4, 553-555 PDF
59- Buisson, L., Thuiller,
W., Lek, S., Lim, P. and Grenouillet, G. Climate
change hastens the turnover of stream fish assemblages.
Global Change Biology, 14, 2232–2248 PDF
58- Estrada-Peña, A. and Thuiller,
W. An assessment of the effect of resolution and
data partitioning on the performance of modelling algorithms
of habitat suitability for ticks. Medical and Veterinary
Entomology, 22, 248-257 PDF
57- Holderegger R., Herrmann D.,
Poncet B., Gugerli F., Thuiller W.,
Taberlet P., Gielly L., Rioux D., Brodbeck S., Aubert S.
& Manel S. (2008) Land ahead: Using genome scans to
identify molecular markers of adaptive relevance. Plant
Ecology and Diversity, 1, 273–283
56- Hughes, G.O., Thuiller,
W., Midgley, G.F., Collins, K., (2008).
Environmental change hastens the demise of the critically
endangered riverine rabbit (Bunolagus
monticularis). Biological Conservation, 141, 23-34
PDF
55- Keith, D.A., Akçakaya, H.R.,
Thuiller, W., Midgley, G.F.,
Pearson, R.G., Phillips, S.J., Regan, H.M., Araújo, M.B,
Rebelo, T.G. Predicting extinction risks under climate
change: coupling stochastic population models with dynamic
bioclimatic habitat models. Biology Letters, 4, 560-563 PDF
54- Kühn, I., Sykes, M.T., Berry,
P., Thuiller, W., Piper, J.,
Nigmann, U., Araújo, M.B., Baletto, E., Bonelli, S., Cabeza,
M., Guisan, A., Hickler, T., Klotz, S., Metzger, M.,
Midgley, G., Musche, M., Olofsson, J., Paterson, J., Penev,
L., Rickebusch, S., Rounsevell, M., Schweiger, O., Wilson,
E., Settele, J. MACIS: Minimisation of and Adaptation to
Climate change Impacts on biodiverSity. GAIA-Ecological
perspectives for science and society, 17, 393-395
53- Le Maitre, D.C., Thuiller,
W., & Schonegevel, L. Developing an approach to
defining the potential distributions of invasive plant
species: a case study of Hakea species in South Africa.
Global Ecology and Biogeography, 17, 569-584 PDF
52- Marmion, M., Hjort, J., Thuiller,
W. & Luoto, M. 2008. A comparison of predictive
methods in modelling the distribution of periglacial
landforms in Finnish Lapland. Earth Surface Processes and
Landforms, 33, 2241–2254 PDF
51- Mermillod-Blondin, F.,
Poggiale, J.C, Tolla, C., Auger, P., Thuiller,
W., and Creuzé des Châtelliers, M. (2008) Using a
mathematical model to simulate the influence of tubificid
worms (Oligochaeta) on oxygen concentrations in hyporheic
sediments. Fundamental and Applied Limnology, 172/2,
135–145.
50- Pompe, S. Hanspach, J.,
Badeck, F., Klotz, S., Thuiller, W.,
Kühn, I. Projecting future land use and climate change
impacts on plant distribution in Germany. Biology Letters,
4, 564-567 PDF
49- Rickebusch, S., Thuiller,
W., Hickler, T., Araujo M.B., Sykes, M.T.,
Schweiger, O. & Lafourcade, B. Incorporating the effects
of changes in vegetation functioning and CO2 on water
availability in plant habitat models. Biology Letters, 4,
556-559 PDF
48- Thuiller,
W., Albert, C.H., Araújo, M.B., Berry, P.M.,
Cabeza, M., Guisan, G., Hickler, T., Midgley, G.F.,
Paterson, J., Schurr, F.M., Sykes, M.T., Zimmermann, N.E.
(2008) Predicting global change impacts on plant species
distributions: future challenges. Perspectives in Plant
Ecology, Evolution and Systematics 9, 137-152 PDF
47- Amis, M.A., Rouget, M.,
Balmford, A., Thuiller, W.,
Kleynhans, C.J., Day, J., Nel, J. (2007) Predicting
freshwater habitat integrity using land use surrogates .
Water SA, 33, 215-221 PDF
46- Broennimann, O., Treier, U.A,
Müller-Schärer, H., Thuiller, W.,
Peterson, A.T.P., & Guisan, A. Evidence of climatic
niche shift during biological invasion. Ecology Letters, 10,
701-709 PDF
45- Ficetola, G.F., Thuiller,
W. and Miaud, C. Prediction and validation of the
potential global distribution of a problematic alien
invasive species – the American bullfrog. Diversity and
Distributions PDF
44- Foden, W., Midgley, G. F.,
Hughes, G. O., Bond, W. J., Thuiller,
W., Hoffman, M. T., Kaleme, P., Underhill, L. G.,
Rebelo, A. G. & Hannah, L. (2007) A changing climate is
eroding the geographical range of the Namib Desert tree Aloe
through population declines and dispersal lags. Diversity
and Distributions, 13, 645-653 PDF
43- Kunstler, G. Thuiller,
W., Curt, T., Bouchaud, M., Jouvie, R., Deruette,
F. and Lepart, J. Fagus sylvatica L. recruitment across a
fragmented Mediterranean Landscape, importance of long
distance effective dispersal, abiotic conditions and biotic
interactions. Diversity and Distributions 13, 799-807 PDF
42- Manne, L.L., Williams, P.H.,
Midgley, G.F., Thuiller, W.,
Rebelo, A.G. and Hannah, L. (2007) Spatial and temporal
variation in species-area relationships in the Fynbos
biological hotspot. Ecography, 30, 852-861 PDF
41- Midgley G.F. and Thuiller,
W. Potential vulnerability of Namaqualand plant
diversity to anthropogenic climate change. Journal of Arid
Environments, 70, 615-628 PDF
40- Quetier, F., Lavorel, S., Thuiller,
W. and Davies, I. (2007) Plant trait-based
assessment of ecosystem service sensitivity to land-use
change in mountain grasslands. Ecological Applications, 17,
2377-2386 PDF
39- Richardson, D.M. and Thuiller,
W. Home away from home - objective mapping of
high-risk source areas for plant introductions. Diversity
and Distributions, 13, 299-312 PDF
38- Thuiller,
W. (2007) Biodiversity - Climate Change and the
Ecologist. Nature, 448, 550-552 PDF
37- Thuiller,
W., Slingsby, J.A., Privett, S.D.J. and Cowling,
R.M. (2007) Stochastic species turnover and stable
coexistence in a fire-prone plant community. PloS ONE 2(9):
e938. doi:10.1371/journal.pone.0000938 PDF
36- Walther, B.A., Schäffer, N.,
Van Niekerk, A., Thuiller, W.,
Rahbek, C. and Chown, S.L. Modelling the winter distribution
of a rare and endangered migrant, the Aquatic Warbler
Acrocephalus paludicola. Ibis 149, 701-714 PDF
35- Wilson, J.R.U., Richardson,
D.M., Rouget, M., Proches, S., Amis, M.A., Henderson, L. and
Thuiller, W. (2007) Residence
time and potential range: crucial considerations in plant
invasion ecology. Diversity and Distributions 13, 11-22 PDF
34- Araújo, M.B., Thuiller,
W., and Pearson, R.G. (2006) Climate warming and
the decline of amphibians and reptiles in Europe. Journal of
Biogeography, 33, 1712-1728 PDF
33- Broennimann O., Thuiller
W., Hughes G.O., Midgley G.F., Alkemade J.R.M.
& Guisan A. (2006) Do geographic distribution, niche
property and life form explain plants’ vulnerability to
global change? Global Change Biology 12, 1079-1093 PDF
32- Heikkinen, R.K., Luoto, M.,
Araújo, M.B., Virkkala, R., Thuiller,
W., Sykes, M.T. Methods and uncertainties in
bioclimatic envelope modeling under climate change. Progress
in Physical Geography, 30, 751-777 PDF
31- Meyer, C.B. and Thuiller,
W. (2006) Accuracy of resource selection functions
across spatial scales. Diversity and Distributions, 12,
288-297 PDF
30- Midgley G.F., Hughes G.O., Thuiller,
W. and Rebelo, A.G. (2006) Migration rate
limitations on climate change induced range shifts in Cape
Proteaceae. Diversity and Distributions, 12, 555-562 PDF
29- Pearson, R.G., Thuiller,
W., Araújo, M.B., Martinez-Meyer, E., Brotons, L.,
McClean, C., Miles, L., Segurado, P., Dawson, T.E., and
Lees, D. C. Model-based uncertainty in species' range
prediction. Journal of Biogeography, 33, 1704-1711 PDF
28- Thuiller,
W., Broennimann, O., Hughes, G.O., Alkemade,
J.R.M., Midgley, G.F. and Corsi, F. (2006) Vulnerability of
African mammals to anthropogenic climate change under
conservative land transformation assumptions. Global Change
Biology. 12, 424-440 PDF
27- Thuiller,
W., Lavorel, S., Sykes, M.T., and Araújo, M.B.
(2006) Using niche-based modelling to assess the impact of
climate change on tree functional diversity in Europe.
Diversity and Distributions. 12, 49-60 PDF
26- Thuiller,
W., Midgley, G.F., Rouget, M., and Cowling, R.M.C.
(2006) Predicting patterns of plant species richness in
megadiverse South Africa. Ecography. 29, 733-744 PDF
25- Thuiller,
W., Midgley, G.F., Hughes, G.O., Bomhard, B., Drew,
G., Rutherford, M.C., and Woodward, F.I. (2006) Endemic
species and ecosystem vulnerability to climate change in
Namibia. Global Change Biology. 12, 759-776 PDF
24-
Thuiller, W., Richardson, D.M., Rouget, M.,
Procheş, Ş. and Wilson, J.R.U. (2006) Interactions between
environment, species traits, and human uses describe
patterns of plant invasions. Ecology. 87, 1755-1769 PDF
Appendix
A Appendix
B
2005
23- Araújo, M.B, Pearson, R.G.,
Thuiller, W. and Erhard, M. (2005) Validation of
species-climate impact models under climate change. Global
Change Biology 11, 1504-1513 PDF
22- Araújo, M.B., Thuiller,
W., Williams, P.H. and Reginster, I. (2005)
Downscaling European species atlas distributions to a finer
resolution: implications for conservation planning. Global
Ecology and Biogeography 14, 17-30 PDF
21- Bomhard B., Richardson D.M.,
Donaldson J.S., Hughes G.O., Midgley G.F., Raimondo D.C.,
Rebelo A.G., Rouget M. and Thuiller
W. (2005) Potential impacts of futurelanduse and
climate change on the Red List status of the Proteaceae in
the Cape Floristic Region, South Africa. Global Change
Biology 11, 1452-1468 PDF
20- Guisan, A. and Thuiller,
W. (2005) Predicting species distribution: offering
more than simple habitat models. Ecology Letters 8, 993-1009
PDF
19- Lavergne, S., Thuiller,
W., Molina, J. and Debussche, M. (2005)
Environmental and human factors influencing rare plant local
occurrence, extinction and persistence: a 115 year study in
the Mediterranean region. Journal of Biogeography 32,
799-811 PDF
18- Midgley, G.F. and Thuiller,
W. (2005) Global Environmental Change and the
Uncertain Fate of Biodiversity. New Phytologist 167, 638-641
PDF
17- Richardson, D.M., Rouget, M.,
Ralston, S.J., Cowling, R.M., van Rensburg, B.J. and Thuiller,
W. (2005) Species richness of alien plants in South
Africa: environmental correlates and the relationship with
native plant species richness, Ecoscience 12, 391-402 PDF
16- Schröter, D., Cramer,W.,
Leemans, R., Prentice, I.C., Araújo, M.B., Arnell, N.W.,
Bondeau, A., Bugmann, H., Carter, T., Garcia, C.A., de la
Vega-Leinert, A.C., Erhard, M., Ewert, F., Glendining, M.,
House, J.I., Kankaanpää, S., Klein, R.J.T., Lavorel, S.,
Lindner, M., Metzger, M.J., Meyer, J., Mitchell, T.,
Reginster, I., Rounsevell, M., Sabaté, S., Sitch, S., Smith,
B., Smith, J., Smith, P., Sykes, M.T., Thonicke, K., Thuiller,
W., Tuck, G., Zaehle, S., Zierl, B. (2005)
Ecosystem service supply and human vulnerability to global
change in Europe. Science 310, 1333-1337 PDF
OnlineMaterial
15- Thuiller,
W., Lavorel, S., and Araújo, M.B. (2005) Niche
properties and geographic extent as predictors of species
sensitivity to climate change. Global Ecology and
Biogeography 14, 347-357 PDF
14-
Thuiller, W., Lavorel, S., Araújo, M.B., Sykes,
M.T., and Prentice, I.C. (2005) Climate change threats to
plant diversity in Europe. Proceedings of the National
Academy of Sciences, USA. 102, 8245-8250 PDF
13-
Thuiller, W., Richardson D.M., Pyšek P., Midgley
G.F., Hughes G.O. and Rouget M. (2005) Niche-based modelling
as a tool for predicting the risk of alien plant invasions
at a global scale. Global Change Biology 11, 2234–2250 PDF
2004
12- Araújo, M. B., Cabeza, M, Thuiller,
W., Hannah, L., Williams. P.H. (2004) Would climate
change drive species out of reserves? An assessment of
existing reserve-selection methods. Global Change Biology
10, 1618-1626 PDF
11- Brotons, L., Thuiller,
W., Araújo M.B., Hirzel A.H. (2004)
Presence-absence vs presence-only modelling methods for
predicting bird habitat suitability. Ecography, 27, 165-172
PDF
10- Simmons, R.E, Barnard, P.,
Dean, W.R.J, Midgley, G.F., Thuiller,
W. and Hughes, G.O. (2004) Climate change and
birds: perspectives and prospects from southern Africa.
Ostrich 75, 295-308 PDF
09- Thuiller,
W. (2004) Patterns and uncertainties of species
range shifts under climate change. Global Change Biology 10,
2020-2027 PDF
08- Thuiller,
W., Araújo M.B., Lavorel S. (2004) Do we need
land-cover data to model species distributions in Europe?
Journal of Biogeography 31, 353-361 PDF
07- Thuiller,
W., Araújo, M. B., Pearson, R. G., Whittaker, R. J.
and Brotons, L. (2004) Uncertainty in predictions of
extinction risk, Nature 430, 34 PDF
06- Thuiller,
W., Brotons L., Araújo M.B., Lavorel S. (2004)
Effects of restricting environmental range of data to
project current and future species distributions. Ecography,
27, 165-172 PDF
05-
Thuiller, W., Lavorel S., Midgley G.F., Lavergne
S., Rebelo A.G. (2004) Relating plant traits and species
distributions along bioclimatic gradients for 88
Leucadendron species in the Cape Floristic Region. Ecology,
85:1688-1699 PDF
2003
04- Midgley, G.F., Hannah L.,
Millar D., Thuiller, W., Booth
A. (2003) Developing regional and species-level assessments
of climate change impacts on biodiversity: A preliminary
study in the Cape Floristic Region. Biological Conservation
112, 87-97 PDF
03- Thuiller,
W. (2003) BIOMOD: Optimising predictions of species
distributions and projecting potential future shifts under
global change. Global Change Biology 9, 1353-1362 [News and
Views in brief, Nature 425, 914] PDF
02- Thuiller,
W., Araújo M.B., Lavorel S. (2003) Generalized
Models versus Classification Tree Analysis: a comparative
study for predicting spatial distributions of plant species
at different scales. Journal of Vegetation Science 14,
669-680 PDF
01- Thuiller,
W., Vaydera J., Pino J., Sabaté S., Lavorel S.,
Gracia C. (2003) Large-scale environmental correlates of
forest tree distributions in Catalonia (NE Spain). Global
Ecology and Biogeography 12, 313-325 PDF
Faure, E., Loison, A., Garel, M., Marchand, P., Lavorel, S. & Thuiller, W. Rewilding up there? Exploring drivers of wildlife recovery in the French Alps
Guerrieri, A., Carteron, A., Bonin, A., Marta, S., Ambrosini, R., Caccianiga, M., Cantera, I., Compostella, C., Diolaiuti, G., Fontaneto, D., Gielly, L., Gili, F., Gobbi, M., Poulenard, J., Taberlet, P., Zerboni, A., Thuiller, W., Ficetola, G.F. Metabarcoding data reveal vertical multi-taxa variation in topsoil communities during the colonization of deglaciated forelands
Marchal, L., Gateuille, D., Naffrechoux, E., Thuiller, W., Saillard, A., & Poulenard, J. Polycyclic aromatic hydrocarbon contents and distributions in soils of northern French Alps
O’Connor, L.M.J., Thuiller, W., Brose, U., Gauzens, B., Gaüzere, P., Graham, C., Harfoot, M., Hirt, M., Lavergne, S., Maiorano, L., Moilanen, A., Verburg, P.H., & Pollock, L.J. The untapped potential of food webs in systematic conservation planning. Conservation Letters, in revision
Staples, T.L., Blois, J., Cramer, K.L., Cunningham, E.T., Dornelas, M., Haberle, S.G., Heger, T., Kiessling, W., Magurran, A.E., O’Dea, A., Penny, A.M., Radeloff, V.C., Smith, J.A, Thuiller, W., Williams, J.W., Pandolfi, J.M. A unifying framework for the measurement of ecological and environmental novelty. Global Ecology & Biogeography, major revision
Book
Book chapters
Akçakaya H.R., Pereira H.M., Canziani G.A., Mbow C., Mori A., Palomo M.G., Soberón J., Thuiller W. & Yachi S. (2016). Improving the rigour and usefulness of scenarios and models through ongoing evaluation and refinement. In: IPBES (2016): The methodological assessment report on scenarios and models of biodiversity and ecosystem services (eds. Ferrier S, Ninan KN, Leadley P, Alkemade R, Acosta LA, Akçakaya HR, Brotons L, Cheung WWL, Christensen V, Harhash KA, Kabubo-Mariara J, Lundquist C, Obersteiner M, Pereira HM, Peterson G, Pichs-Madruga R, Ravindranath N, Rondinini C & Wintle BA). Secretariat of the Intergovernmental Science-Policy Platform for Biodiversity and Ecosystem Services Bonn, Germany.
Bystrova, D., Poggiato, G., Arbel, J. & Thuiller, W. Latent Factor Models: A Tool for Dimension Reduction in Joint Species Distribution Models. In Peyrard, N & Gimenez, O., eds., Statistical Approaches for hidden variables in Ecology.
Lavorel, S., Spiegelberger, T.,
Mauz, I., Bigot, S., Granjou, C., Dobremez, L., Nettier, B.,
Thuiller, W., Brun, J.-J. &
Cozic, P. (2013) Fostering Research into Coupled Long-Term
Dynamics of Climate, Land Use, Ecosystems and Ecosystem
Services in the Central French Alps. In Singh, S.J., Haberl,
H., Chertow, M., Mirtl, M. & Schmid, M. Long Term
Socio-Ecological Research, Springer, Dordrecht
Mazel, F. & Thuiller, W. (2020). Functional and Phylogenetic Diversity–Area Relationships. In Matthews, T.J., Triantis, K.A. & Whittaker, R.J., eds., The species-area relationships: theory and application. Cambridge University Press, pp. 107-132.
Midgley, G.F., Thuiller,
W. and Higgins, S.I. (2007) Plant species migration
as a key uncertainty in predicting future impacts of climate
change on ecosystems: Progress and challenges, In Canadell,
J., Pataki, D.E. and Pitelka, L.F., eds., Terrestrial
Ecosystems in a Changing World, Springer-Verlag, pp.
129-137. PDF
Thuiller, W. & Münkemüller, T. (2010). Habitat suitability modeling. In Moeller, A.P., Fielder, W. & Berthold, P. eds., Effects of climate change on birds, Oxford University Press. PDF
Thuiller, W.
(2005) Modélisation empirique de la biodiversité : un outil
pour évaluer l'impact des changements globaux. In: Les
biodiversités entre sciences et politiques : objets,
théories, pratiques (eds. Larrère R, Lepart J, Marty J and
Vivien F-D), pp. 113-123 CNRS-Editions, Paris.
Thuiller, W., Richardson, D.M., and Midgley, G.F. (2007) Will climate change promote alien plant invasions? In Nentwig, W. eds., Biological Invasions, Ecological Studies, Vol. 193, Springer-Verlag, Berlin Heidelberg, pp. 197-211 PDF
Walther, B.A., van Niekerk, A., Thuiller, W., Baumann, S., Dean, W.R.J., de Bruijn, B., Gutteridge, K., Jones, P.J., Nikolaus, G., Pearson, D.J., Robinson, S.P., Salewski, V., Schäffer, N., Taylor, P.B., Tushabe, H., Williams, P.H. & Rahbek, C. (2010). A database of Western Palearctic birds migrating within Africa to guide conservation decisions. Proceedings of the 12th Pan-African Ornithological Congress, 2008. (ed. by Harebottle, D.M., Craig, A.J.F.K., Anderson, M.D., Rakotomanana, H. & Muchai, M.), pp. 50–104. Animal Demography Unit, Cape Town.
Popular and applied papers
Bonet, R., Arnaud, F., Bodin, X., Bouche, M., Boulangeat, I., Bourdeau, P., Bouvier, M., Cavalli, L., Choler, P., Delestrade, A., Dentant, C., Dumas, D., Fouinat, L., Gardent, M., Lavergne, S., Lavorel, S., Naffrechoux, E., Nellier, Y., Perga, M.-E., Sagot, C., Senn, O. & Thuiller, W. (2016) Indicators of climate: Ecrins National Park participates in long-term monitoring to help determine the effects of climate change. Eco.Mont, 8, 44-52. PDF
Barnard, P., Thuiller,
W., and Midgley, G.F. (2005) Invasive species under
global change – signs from a homogenized world. GISPNews 4,
8-11 PDF
Chuine I. and Thuiller W. (2005) Impact du changement climatique sur la biodiversité. Le Courrier de la Nature 223, 20-26
Combrisson D., Saillard A. & Thuiller W. 2020. — La prise en compte de la malacofaune continentale comme indicateur des changements globaux, in Léonard L. (éd.), Colloque national de malacologie continentale, Nantes, 6 et 7 décembre 2018. Naturae 2020 (16): 225-230. https://doi.org/10.5852/naturae2020a16
